Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K6974_RS00210 Genome accession   NZ_CP082204
Coordinates   28754..29536 (+) Length   260 a.a.
NCBI ID   WP_222337093.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23754..34536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00190 (K6974_00185) mreD 24575..25090 (+) 516 WP_004195373.1 rod shape-determining protein MreD -
  K6974_RS00195 (K6974_00190) pcsB 25175..26431 (+) 1257 WP_105119086.1 peptidoglycan hydrolase PcsB -
  K6974_RS00200 (K6974_00195) - 26534..27502 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  K6974_RS00205 (K6974_00200) - 27589..28767 (+) 1179 WP_222337092.1 pyridoxal phosphate-dependent aminotransferase -
  K6974_RS00210 (K6974_00205) recO 28754..29536 (+) 783 WP_222337093.1 DNA repair protein RecO Machinery gene
  K6974_RS00215 (K6974_00210) plsX 29533..30540 (+) 1008 WP_024375936.1 phosphate acyltransferase PlsX -
  K6974_RS00220 (K6974_00215) - 30533..30781 (+) 249 WP_002935333.1 phosphopantetheine-binding protein -
  K6974_RS00225 (K6974_00220) purC 30899..31606 (+) 708 WP_222337094.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30515.02 Da        Isoelectric Point: 5.4193

>NTDB_id=527196 K6974_RS00210 WP_222337093.1 28754..29536(+) (recO) [Streptococcus suis strain FJSM5]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKFRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQAFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=527196 K6974_RS00210 WP_222337093.1 28754..29536(+) (recO) [Streptococcus suis strain FJSM5]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTTCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTCAAAATCAATGATGATGGGCTGTCTTATATTGAGGATTTTCATCAGGTACAGGCATTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACATTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCGTTTGATGAACTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCAAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-76)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665