Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   K6972_RS09845 Genome accession   NZ_CP082203
Coordinates   2038348..2038797 (-) Length   149 a.a.
NCBI ID   WP_024407658.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033348..2043797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS09830 (K6972_09830) - 2033845..2034639 (+) 795 WP_024384180.1 formate/nitrite transporter family protein -
  K6972_RS09835 (K6972_09835) - 2034722..2036506 (-) 1785 WP_222812567.1 ABC transporter ATP-binding protein -
  K6972_RS09840 (K6972_09840) - 2036646..2038355 (-) 1710 WP_105136537.1 ABC transporter ATP-binding protein -
  K6972_RS09845 (K6972_09845) rcrR 2038348..2038797 (-) 450 WP_024407658.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  K6972_RS09850 (K6972_09850) - 2039019..2040035 (+) 1017 WP_014638751.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  K6972_RS09855 (K6972_09855) galU 2040080..2040979 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  K6972_RS09860 (K6972_09860) - 2040998..2041675 (-) 678 WP_004298343.1 rhomboid family intramembrane serine protease -
  K6972_RS09865 (K6972_09865) - 2041659..2042201 (-) 543 WP_222812568.1 5-formyltetrahydrofolate cyclo-ligase -
  K6972_RS09870 (K6972_09870) - 2042244..2043371 (-) 1128 WP_208546550.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17603.11 Da        Isoelectric Point: 7.5572

>NTDB_id=527185 K6972_RS09845 WP_024407658.1 2038348..2038797(-) (rcrR) [Streptococcus suis strain NJ3]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=527185 K6972_RS09845 WP_024407658.1 2038348..2038797(-) (rcrR) [Streptococcus suis strain NJ3]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACTATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416