Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   K6972_RS08645 Genome accession   NZ_CP082203
Coordinates   1758330..1761155 (-) Length   941 a.a.
NCBI ID   WP_222812506.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1753330..1766155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS08620 (K6972_08620) - 1754677..1755642 (+) 966 WP_002942449.1 LacI family DNA-binding transcriptional regulator -
  K6972_RS08625 (K6972_08625) nusB 1755721..1756140 (-) 420 WP_002938276.1 transcription antitermination factor NusB -
  K6972_RS08630 (K6972_08630) - 1756130..1756522 (-) 393 WP_002942446.1 Asp23/Gls24 family envelope stress response protein -
  K6972_RS08635 (K6972_08635) efp 1756550..1757107 (-) 558 WP_002942436.1 elongation factor P -
  K6972_RS08640 (K6972_08640) - 1757171..1758232 (-) 1062 WP_222812505.1 Xaa-Pro peptidase family protein -
  K6972_RS08645 (K6972_08645) uvrA 1758330..1761155 (-) 2826 WP_222812506.1 excinuclease ABC subunit UvrA Machinery gene
  K6972_RS08650 (K6972_08650) - 1762356..1763300 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  K6972_RS08655 (K6972_08655) - 1763316..1763972 (+) 657 WP_024385182.1 DUF1129 domain-containing protein -
  K6972_RS08660 (K6972_08660) rpsR 1764358..1764597 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  K6972_RS08665 (K6972_08665) ssbA 1764630..1765124 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  K6972_RS08670 (K6972_08670) rpsF 1765136..1765426 (-) 291 WP_002942403.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103832.98 Da        Isoelectric Point: 6.1310

>NTDB_id=527174 K6972_RS08645 WP_222812506.1 1758330..1761155(-) (uvrA) [Streptococcus suis strain NJ3]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRLFDSIEAALRIADGYVIIDTMDE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEKGLHIGQLSDLSVADHLEVIENLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLDRRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKTISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVASNPASFTGQYLKTKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=527174 K6972_RS08645 WP_222812506.1 1758330..1761155(-) (uvrA) [Streptococcus suis strain NJ3]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTAAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTCGATACTCTGTATGCCGAAGGCCAACGCCGTT
ACGTAGAGTCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAACCTGATGTGGATTCCATAGAGGGTCTC
AGCCCTGCTATTTCCATAGACCAAAAAACAACCTCGCGGAACCCGCGTTCGACGGTTGGAACGGCAACGGAAATCAATGA
TTATCTCCGCCTGCTCTATGCTCGGGTCGGGGTGCCTTACTGTATCAATGGGCACGGGGCGATTGCGGCTTCTTCGGTGG
AGCAGATCGTCGATGAGGTCTTGGAGTTGCCAGAACGCCAGCGTTTGCAGATCCTAGCTCCGATTGTTCGTAAGAAAAAG
GGGCAACACAAGACCATTTTTGAAAAAGTGCAGAAGGACGGCTACGTTCGGGTCCGTGTCAATGGCGATGTCTATGATGT
GTCGGAAGTGCCTGAGTTGTCCAAGAGCAAGGCTCATAACATTGAGGTCGTGGTCGATCGGATTGTGATCAAAGAGGGCA
TTCGCTCGCGGCTTTTTGACTCCATTGAGGCGGCCCTGCGGATTGCGGACGGTTATGTCATCATCGATACCATGGATGAG
AAGGAATTGCTTTTCTCTGAGTACTATGCCTGTCCAGTTTGTGGCTTTACGGTGCCTGAGTTGGAGCCTCGCCTCTTCTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGACTGTGACGGTTTAGGCATGAAGCTGGAAGTGGATACAGATTTGATTGTTC
CAGATGCCAGCAAGACCTTGCGTGAGGGTGCTTTGGCTCCTTGGAATCCAATCTCTTCCAACTATTATCCTCAGATGCTG
GAGCAGGCTATGAACCATTTTGGTGTGGACATGGACAAGCCTTTCGAGGAATTGACGGAAGAGGAGAAGAATCTGATTTT
CAATGGTTCTGACGGAAAAGAATTCCATTTCCATTATGAAAATGAGTTCGGTGGGGTGCGTGATATTGACATTCCATTTG
AAGGCTTGATTACTAACATTAACCGCCGCTACCGTGAAACCAATAGTGATTACACACGGACAGTCATGAAGACTTACATG
AATGAGTTGACCTGTGGGACCTGCCACGGCTACCGCCTCAATGACCAAGCCTTATCTGTCAAGGTCGGTGGTGAGAAGGG
ACTTCATATAGGGCAGTTGTCTGACTTGTCCGTAGCGGATCATCTGGAAGTCATTGAAAATCTGACCTTGTCTGAAAATG
AAGCCACCATTGCGACACCGATTGTCAAGGAAATCAAGGACCGCCTGTCCTTCCTTAATAACGTTGGTCTCAACTATCTA
ACTCTTTCACGAGCAGCAGGAACCCTTTCTGGTGGTGAGAGTCAGCGGATTCGTCTGGCGACTCAGATTGGCTCTAACCT
GTCTGGTGTTCTTTACATCTTGGATGAGCCGTCGATTGGTTTGCACCAGCGGGACAATGACCGTCTGATTGCTAGTCTTA
AGAAAATGCGTGATTTGGGCAATACTTTGATTGTGGTGGAGCATGATGAGGACACCATGCGTGAGGCGGACTGGTTGATT
GACATTGGTCCAGGTGCGGGTGTCTTTGGCGGAGAAATCGTGGCTTCTGGAACACCTGCCCAAGTTGCCAAAAACAAGAA
ATCCATTACAGGTCAATACCTGTCTGGCAAACGTGAAATTCCTGTTCCTCTAGACCGCCGTGTTGGAAATGGTCGTTTCC
TGGAGGTAACAGGTGCCAAGGAAAACAACCTGCAGGATGTAACGGTCCGTTTTCCACTTGGAAAATTTGTTGCGGTGACA
GGGGTATCTGGCTCTGGTAAGTCAACTCTGGTCAACTCCATTTTGAAAAAAGCCATTGCTCAGAAGCTCAATCGCAATTC
GGACAAGCCAGGCAAGTTCAAAACCATTTCAGGAATTGAACACTTGGACCGCCTGATTGATATTGACCAAAGCCCGATTG
GACGGACACCTCGTTCCAACCCAGCCACCTACACAGGTGTCTTTGACGATATTCGTGACCTCTTTGCCCAGACCAATGAA
GCGAAAATCCGTGGCTATAAGAAGGGGCGATTCTCCTTTAACGTCAAAGGTGGTCGTTGCGAAGCCTGCTCTGGTGACGG
GATTATCAAGATTGAAATGCACTTCCTGCCTGATGTCTTTGTGCCTTGTGAAGTCTGTCATGGCCACCGCTACAACTCGG
AAACCTTGGAAGTACACTACAAGGAGAAAAATATCGCTCAGGTCCTTGATATGACGGTCAATGATGCGGTCGAGTTCTTC
AAACACATTCCAAAAATCGAACGCAAGCTCCGCACCATTCAAGATGTGGGCTTGGGCTATGTGACTTTGGGACAACCTGC
GACAACCCTGTCAGGTGGTGAGGCCCAACGGATGAAATTGGCTTCTGAACTCCACAAGCGGTCAACTGGTAAGTCTTTGT
ATATCTTGGATGAGCCAACGACAGGGCTGCATACCGAAGACATTGCCCAGTTGCTCAAGGTCTTGGCCCGCTTTGTCGAT
GACGGCAACACTGTCCTTGTCATCGAGCATAATCTGGATGTGATTAAGACAGCAGACCACATTATCGACATGGGACCAGA
AGGCGGTGTCGGTGGCGGTACCGTTGTCGCGACAGGAACGCCAGAAGAAGTAGCTAGTAACCCAGCCAGCTTTACAGGTC
AGTATTTGAAAACGAAGTTGAAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.362

99.894

0.893
  uvrA Streptococcus pneumoniae TIGR4

89.362

99.894

0.893
  uvrA Streptococcus pneumoniae D39

89.362

99.894

0.893