Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K6972_RS07485 Genome accession   NZ_CP082203
Coordinates   1513918..1514568 (-) Length   216 a.a.
NCBI ID   WP_024384330.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508918..1519568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS07480 (K6972_07480) - 1512535..1513917 (-) 1383 WP_105242417.1 HAMP domain-containing sensor histidine kinase -
  K6972_RS07485 (K6972_07485) scnR 1513918..1514568 (-) 651 WP_024384330.1 response regulator transcription factor Regulator
  K6972_RS07490 (K6972_07490) ccpA 1515636..1516640 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  K6972_RS07495 (K6972_07495) - 1516850..1517935 (+) 1086 WP_222812438.1 Xaa-Pro peptidase family protein -
  K6972_RS10700 - 1518108..1518320 (-) 213 WP_315984686.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24594.72 Da        Isoelectric Point: 4.9774

>NTDB_id=527167 K6972_RS07485 WP_024384330.1 1513918..1514568(-) (scnR) [Streptococcus suis strain NJ3]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFDGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=527167 K6972_RS07485 WP_024384330.1 1513918..1514568(-) (scnR) [Streptococcus suis strain NJ3]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGCGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTGACGGTGGACAGGCATTAGAAGAAATCCAGAAAATGGAATTTGATCTGCTTATTTTGGATATTA
TGGTGCCGACGATGACAGGATTGGAGTTATTGACAGCAGTTCGGAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCT
TTAAGTGATGAGTATACTCAATTAATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTTTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGAATAGGTGACATCCTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATATTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.937

100

0.38