Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   K6972_RS06615 Genome accession   NZ_CP082203
Coordinates   1334538..1335020 (+) Length   160 a.a.
NCBI ID   WP_202846202.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329538..1340020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS06585 (K6972_06585) - 1329567..1330715 (+) 1149 WP_222759151.1 cobalamin-independent methionine synthase II family protein -
  K6972_RS06590 (K6972_06590) - 1330786..1332096 (-) 1311 WP_222759152.1 GntP family permease -
  K6972_RS06595 (K6972_06595) folK 1332147..1332635 (-) 489 WP_105212406.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6972_RS06600 (K6972_06600) folB 1332632..1332994 (-) 363 WP_024400723.1 dihydroneopterin aldolase -
  K6972_RS06605 (K6972_06605) folP 1332987..1333799 (-) 813 WP_222759153.1 dihydropteroate synthase -
  K6972_RS06610 (K6972_06610) folE 1333808..1334371 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  K6972_RS06615 (K6972_06615) mutX 1334538..1335020 (+) 483 WP_202846202.1 8-oxo-dGTP diphosphatase Machinery gene
  K6972_RS06620 (K6972_06620) - 1335064..1335741 (-) 678 WP_222759155.1 DUF4956 domain-containing protein -
  K6972_RS06625 (K6972_06625) - 1335728..1336471 (-) 744 WP_024384806.1 polyphosphate polymerase domain-containing protein -
  K6972_RS06630 (K6972_06630) - 1336664..1336966 (+) 303 WP_029171211.1 hypothetical protein -
  K6972_RS06635 (K6972_06635) - 1336987..1337253 (-) 267 WP_024407417.1 DUF2087 domain-containing protein -
  K6972_RS06640 (K6972_06640) pheT 1337308..1339707 (-) 2400 WP_222812391.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18413.70 Da        Isoelectric Point: 4.4540

>NTDB_id=527156 K6972_RS06615 WP_202846202.1 1334538..1335020(+) (mutX) [Streptococcus suis strain NJ3]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQAWLLENTPFFSACFRYDGDSLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=527156 K6972_RS06615 WP_202846202.1 1334538..1335020(+) (mutX) [Streptococcus suis strain NJ3]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAACTAGAACCTGGCGAAACACCACAGGCTTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTTTGATCGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACTTGGGAAGGCGATCGCCATTTTCAAGCATGGCTATTAG
AGAACACCCCCTTCTTTTCCGCTTGCTTCCGCTATGACGGGGATAGCTTGCTGGATTACAGCGTTGATTTTTATGAGGAG
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

78.431

95.625

0.75