Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I88_RS18875 Genome accession   NZ_CP068108
Coordinates   4236842..4238212 (+) Length   456 a.a.
NCBI ID   WP_002989250.1    Uniprot ID   A0A9Q6ZAX3
Organism   Myroides odoratus strain FDAARGOS_1131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4231842..4243212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I88_RS18860 (I6I88_18860) - 4234354..4235400 (+) 1047 WP_002989241.1 sensor histidine kinase -
  I6I88_RS18865 (I6I88_18865) - 4235397..4236125 (+) 729 WP_002989244.1 LytTR family DNA-binding domain-containing protein -
  I6I88_RS18870 (I6I88_18870) - 4236146..4236718 (+) 573 WP_002989247.1 hypothetical protein -
  I6I88_RS18875 (I6I88_18875) radA 4236842..4238212 (+) 1371 WP_002989250.1 DNA repair protein RadA Machinery gene
  I6I88_RS18880 (I6I88_18880) - 4238233..4239900 (+) 1668 WP_002989253.1 DUF4139 domain-containing protein -
  I6I88_RS18885 (I6I88_18885) - 4239937..4241394 (-) 1458 WP_002989256.1 oligosaccharide flippase family protein -
  I6I88_RS18890 (I6I88_18890) - 4241421..4242176 (-) 756 WP_002989258.1 PdaC/SigV domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49960.43 Da        Isoelectric Point: 6.0321

>NTDB_id=527154 I6I88_RS18875 WP_002989250.1 4236842..4238212(+) (radA) [Myroides odoratus strain FDAARGOS_1131]
MAKVKTAFFCQSCGAQSPKWMGQCPTCKEWNTLVEEVIQKEEKTAWKAVSSSASSSKRIAKPLKVKEIDSAEEIRMNTLD
GELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKVLYVSGEESQKQIKMRAERINPNNENCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTDYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKDEELSGTAIAATLEGMRPLMVEVQSLVSTAVY
GTPQRSATGYNLKRLNMLLAVLEKRAGFRLGQKDVFLNITGGISVDDPAIDLGVVAAILSSDQDISIQKGVTFAGEVGLS
GEIRPINRVDQRIQEAEKLGFSEILVSKYNKISYTGTGIKVILVTKIEDVVEHLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=527154 I6I88_RS18875 WP_002989250.1 4236842..4238212(+) (radA) [Myroides odoratus strain FDAARGOS_1131]
ATGGCAAAAGTAAAAACCGCTTTTTTCTGTCAAAGTTGTGGTGCTCAATCTCCCAAATGGATGGGGCAATGTCCTACTTG
TAAGGAATGGAATACGCTGGTAGAGGAGGTGATTCAAAAAGAAGAGAAAACAGCATGGAAGGCCGTTAGTTCGAGTGCAT
CCTCTTCAAAACGTATAGCAAAACCTTTAAAAGTAAAGGAAATTGACAGCGCAGAGGAAATCCGCATGAATACCTTGGAT
GGGGAATTGAATCGCGTGTTAGGTGGTGGATTAGTCCCTGGATCGATGGTTTTACTAGGAGGGGAACCCGGAATTGGAAA
AAGTACGTTGCTTTTGCAAATTTCTTTGCGTTTACCTTTTAAAGTACTTTATGTTTCTGGAGAAGAAAGTCAGAAGCAAA
TCAAAATGCGTGCAGAACGCATCAATCCCAATAATGAAAATTGTTATATCTTAACAGAAACCAATACCCAAAATATCTTT
CGTCAGATTGAAGAAATTCAGCCAGATGTGTTGATTATTGACTCTATTCAAACCTTGCATACGGATTATATTGAATCCTC
TGCAGGAACAGTTTCTCAAATTAAAGAATGTACAGCAGAACTGACGAAGTTTGCCAAAGAGACTGGTACTCCCGTGTTGA
TTATTGGGCATATTACCAAAGATGGAAGTATTGCTGGTCCGAAAATGTTGGAACATATGGTAGATACTGTGTTGCAATTT
GAAGGAGATCGCAATCACGTGTACCGTATTTTACGTGCCAATAAAAACCGCTTTGGATCTACGGCTGAATTGGGCATTTA
CGAAATGCAAGGCAGTGGATTGAGAGAAGTTTCCAATCCATCAGAAATTTTAATTTCCCATAAAGACGAAGAATTATCGG
GAACAGCGATTGCTGCAACTTTAGAGGGGATGCGTCCCTTGATGGTAGAGGTGCAATCGTTGGTCAGTACAGCAGTCTAT
GGAACGCCACAACGCAGTGCTACAGGATATAATCTGAAGCGATTGAATATGTTGTTGGCGGTATTGGAAAAAAGAGCAGG
ATTCCGCTTAGGACAGAAAGACGTTTTCTTAAATATTACAGGAGGAATATCGGTTGATGACCCTGCCATTGATTTAGGAG
TAGTCGCTGCAATTCTCTCTTCAGATCAAGATATATCCATTCAAAAAGGAGTGACTTTTGCTGGAGAAGTAGGGCTTTCA
GGAGAGATCCGACCGATTAATCGCGTGGATCAACGCATTCAAGAAGCGGAGAAATTAGGTTTTTCGGAGATACTTGTTTC
CAAATACAACAAGATTTCATACACGGGAACAGGAATAAAAGTTATTTTAGTAACGAAGATCGAGGATGTGGTAGAACATC
TCTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

50

100

0.507
  radA Streptococcus pneumoniae Rx1

50

100

0.507
  radA Streptococcus pneumoniae D39

50

100

0.507
  radA Streptococcus pneumoniae TIGR4

50

100

0.507
  radA Bacillus subtilis subsp. subtilis str. 168

50.217

100

0.507
  radA Streptococcus mitis NCTC 12261

49.891

100

0.502
  radA Streptococcus mitis SK321

49.891

100

0.502