Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K6972_RS05455 Genome accession   NZ_CP082203
Coordinates   1091595..1093331 (-) Length   578 a.a.
NCBI ID   WP_222812350.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086595..1098331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS05440 (K6972_05440) - 1087446..1088732 (-) 1287 WP_205015162.1 homoserine dehydrogenase -
  K6972_RS05445 (K6972_05445) - 1088837..1089760 (+) 924 WP_222812989.1 polysaccharide deacetylase family protein -
  K6972_RS05450 (K6972_05450) rcrQ 1089817..1091586 (-) 1770 WP_222812349.1 ABC transporter ATP-binding protein Regulator
  K6972_RS05455 (K6972_05455) rcrP 1091595..1093331 (-) 1737 WP_222812350.1 ABC transporter ATP-binding protein Regulator
  K6972_RS05460 (K6972_05460) - 1093407..1093649 (-) 243 WP_012028079.1 KH domain-containing protein -
  K6972_RS05465 (K6972_05465) rpsP 1093671..1093943 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  K6972_RS05470 (K6972_05470) - 1094068..1094376 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  K6972_RS05475 (K6972_05475) pcp 1094376..1095023 (-) 648 WP_024377828.1 pyroglutamyl-peptidase I -
  K6972_RS05480 (K6972_05480) - 1095020..1095781 (-) 762 WP_222812351.1 class I SAM-dependent methyltransferase -
  K6972_RS05485 (K6972_05485) - 1095852..1096166 (-) 315 WP_222812352.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65140.42 Da        Isoelectric Point: 5.1048

>NTDB_id=527150 K6972_RS05455 WP_222812350.1 1091595..1093331(-) (rcrP) [Streptococcus suis strain NJ3]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGFTETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGLDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=527150 K6972_RS05455 WP_222812350.1 1091595..1093331(-) (rcrP) [Streptococcus suis strain NJ3]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTGGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGGTTGCCGACATTTTTGGCGAGAATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGACTGATTGTCCTGCTAGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACGACCAATATAGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCACGAGTATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTCTTGATGCAATTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCCTCTGTCATCATGACCTTGGTAACTAGTCCAAGTCTGGCTTGGACAGTCGCA
GTAGCTATGCCGTTTCTCGTTATCGTTATTTTCTATGTAGCAACCAAAACCCGCCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGATACCATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGTCTGACAGAA
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGATCCTTTGCAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGATTTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGGGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTTTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCCGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTCTTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.5

100

0.4