Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K6972_RS05450 Genome accession   NZ_CP082203
Coordinates   1089817..1091586 (-) Length   589 a.a.
NCBI ID   WP_222812349.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084817..1096586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS05430 (K6972_05430) murB 1085439..1086347 (-) 909 WP_029171811.1 UDP-N-acetylmuramate dehydrogenase -
  K6972_RS05435 (K6972_05435) thrB 1086582..1087442 (-) 861 WP_002938588.1 homoserine kinase -
  K6972_RS05440 (K6972_05440) - 1087446..1088732 (-) 1287 WP_205015162.1 homoserine dehydrogenase -
  K6972_RS05445 (K6972_05445) - 1088837..1089760 (+) 924 WP_222812989.1 polysaccharide deacetylase family protein -
  K6972_RS05450 (K6972_05450) rcrQ 1089817..1091586 (-) 1770 WP_222812349.1 ABC transporter ATP-binding protein Regulator
  K6972_RS05455 (K6972_05455) rcrP 1091595..1093331 (-) 1737 WP_222812350.1 ABC transporter ATP-binding protein Regulator
  K6972_RS05460 (K6972_05460) - 1093407..1093649 (-) 243 WP_012028079.1 KH domain-containing protein -
  K6972_RS05465 (K6972_05465) rpsP 1093671..1093943 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  K6972_RS05470 (K6972_05470) - 1094068..1094376 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  K6972_RS05475 (K6972_05475) pcp 1094376..1095023 (-) 648 WP_024377828.1 pyroglutamyl-peptidase I -
  K6972_RS05480 (K6972_05480) - 1095020..1095781 (-) 762 WP_222812351.1 class I SAM-dependent methyltransferase -
  K6972_RS05485 (K6972_05485) - 1095852..1096166 (-) 315 WP_222812352.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65762.84 Da        Isoelectric Point: 5.5789

>NTDB_id=527149 K6972_RS05450 WP_222812349.1 1089817..1091586(-) (rcrQ) [Streptococcus suis strain NJ3]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLALYALR
ALMYEIGAYGSTYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=527149 K6972_RS05450 WP_222812349.1 1089817..1091586(-) (rcrQ) [Streptococcus suis strain NJ3]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TAGACATGGCAAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCGCTCTATGCACTTCGT
GCCCTTATGTATGAAATCGGCGCCTATGGTTCTACCTATTTCATGACTAAGGCGGTACAGGGAGCAACCAAGGAACTGCG
GCAGGATTTGAGTCACAAGATTAACAAAATTCCCGTTTCCTATTTTGATAAACACCAGTATGGTGATTTGCTGGGTCGAT
TTACAAGTGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTGGCTCTTGTGGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGTTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCAGGCTTGCTCATGCCCCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTCGGCTATTCAGAAGACAAGCCACTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTCGGAATATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGGCGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCCAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCAACTTCTTCAGTTGATACTCGTTTGGAACTCTTGATTCAAAAAGCTATGAAACGATTAATGAAGG
GACGAACAAGTTTTGTCATAGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGCGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.316

100

0.435