Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   K6972_RS05135 Genome accession   NZ_CP082203
Coordinates   1022668..1023738 (-) Length   356 a.a.
NCBI ID   WP_222812968.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1017668..1028738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS05120 (K6972_05120) braR 1019140..1019805 (+) 666 WP_158454887.1 response regulator transcription factor Regulator
  K6972_RS05125 (K6972_05125) - 1019802..1020743 (+) 942 WP_222812966.1 sensor histidine kinase -
  K6972_RS05130 (K6972_05130) - 1020819..1022327 (+) 1509 WP_222812967.1 phosphomannomutase/phosphoglucomutase -
  K6972_RS05135 (K6972_05135) xerS 1022668..1023738 (-) 1071 WP_222812968.1 tyrosine recombinase XerS Machinery gene
  K6972_RS05140 (K6972_05140) - 1023905..1024426 (-) 522 WP_024408901.1 AAA family ATPase -
  K6972_RS05145 (K6972_05145) - 1024493..1025233 (-) 741 WP_222812969.1 DUF3307 domain-containing protein -
  K6972_RS05150 (K6972_05150) - 1025237..1025905 (-) 669 WP_222812970.1 SatD family protein -
  K6972_RS05155 (K6972_05155) tnpA 1026215..1026688 (-) 474 WP_222812971.1 IS200/IS605 family transposase -
  K6972_RS05160 (K6972_05160) ffh 1026850..1028424 (-) 1575 WP_202846349.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41608.87 Da        Isoelectric Point: 9.5403

>NTDB_id=527147 K6972_RS05135 WP_222812968.1 1022668..1023738(-) (xerS) [Streptococcus suis strain NJ3]
MRRELLLKKIDQLKEIMPWYVMEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVTVERIADIPLDVLEHLTKKDME
SFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=527147 K6972_RS05135 WP_222812968.1 1022668..1023738(-) (xerS) [Streptococcus suis strain NJ3]
ATGCGTCGCGAATTATTATTGAAAAAAATTGATCAACTGAAGGAAATCATGCCTTGGTATGTCATGGAATATTATCAGTC
AAAGTTGGCTGTGCCTTACAGTTTTACAACCTTGTACGAATACTTGAAAGAATACCGTCGTTTTTTTGAGTGGTTACAGG
ATTCAGATTTGGTCACTGTTGAACGGATTGCTGACATTCCGCTAGATGTTCTGGAACATCTGACCAAAAAAGATATGGAG
TCCTTTATTCTATATCTGCGAGAGCGTCCCTTGCTGAACGCCAATACAACGCAGAATGGTGTGTCGCAGACCACAATTAA
CCGTACCCTGTCGGCACTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAGAAGGTGTCCACAAAGAAGAAGAAGGAAACTTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTCGATAAAGAATACCAGGTAAAGTTATCCAAACGTGCCCT
CTCATCCTTCCAGAAAAATAAGGAGAGGGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAGG
CGGTGAATTTGGACCTTCGAGACGTAAACCTCAATATGATGATTATCGAAGTAACCCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTAGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCTTATCCGAATACCGCGGTCTGCCCAATCGTATCGACGCTTCTTCTATCGAAAAAATGGTGGCTA
AGTACTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACGCTGGCAACACGGCTCTACGACGCCACC
AAGTCTCAAGTTCTGGTCAGTCATCAGCTGGGCCACGCCAATACCCAGGTAACCGACCTCTATACCCATATCGTCAACGA
TGAGCAGAAAAATGCTCTGGATCAATTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(190-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831