Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I89_RS15455 Genome accession   NZ_CP068107
Coordinates   3481133..3482503 (-) Length   456 a.a.
NCBI ID   WP_115092262.1    Uniprot ID   A0A378U5H4
Organism   Myroides odoratus strain FDAARGOS_1132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3476133..3487503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I89_RS15435 (I6I89_15435) - 3476511..3476981 (+) 471 WP_002989261.1 Lrp/AsnC family transcriptional regulator -
  I6I89_RS15440 (I6I89_15440) - 3477173..3477928 (+) 756 WP_115092265.1 PdaC/SigV domain-containing protein -
  I6I89_RS15445 (I6I89_15445) - 3477955..3479412 (+) 1458 WP_115092264.1 oligosaccharide flippase family protein -
  I6I89_RS15450 (I6I89_15450) - 3479449..3481113 (-) 1665 WP_115092263.1 DUF4139 domain-containing protein -
  I6I89_RS15455 (I6I89_15455) radA 3481133..3482503 (-) 1371 WP_115092262.1 DNA repair protein RadA Machinery gene
  I6I89_RS15460 (I6I89_15460) - 3482627..3483199 (-) 573 WP_115092261.1 hypothetical protein -
  I6I89_RS15465 (I6I89_15465) - 3483219..3483947 (-) 729 WP_115092260.1 LytR/AlgR family response regulator transcription factor -
  I6I89_RS15470 (I6I89_15470) - 3483944..3484990 (-) 1047 WP_115092803.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49974.46 Da        Isoelectric Point: 6.0321

>NTDB_id=527141 I6I89_RS15455 WP_115092262.1 3481133..3482503(-) (radA) [Myroides odoratus strain FDAARGOS_1132]
MAKVKTAFFCQSCGAQSPKWMGQCPTCKEWNTLVEEVIQKEEKTAWKAVSSSASTSKRIAKPLKVKEIDSAEEIRMNTLD
GELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKVLYVSGEESQKQIKMRAERINPNNENCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTDYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKDEELSGTAIAATLEGMRPLMVEVQSLVSTAVY
GTPQRSATGYNLKRLNMLLAVLEKRAGFRLGQKDVFLNITGGISVDDPAIDLGVVAAILSSDQDISIQKGVTFAGEVGLS
GEIRPINRVDQRIQEAEKLGFSEILVSKYNKISYTGTGIKVILVTKIEDVVEHLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=527141 I6I89_RS15455 WP_115092262.1 3481133..3482503(-) (radA) [Myroides odoratus strain FDAARGOS_1132]
ATGGCAAAAGTAAAAACCGCTTTTTTCTGTCAAAGTTGTGGTGCTCAATCTCCCAAATGGATGGGACAATGTCCTACTTG
TAAGGAATGGAATACGCTGGTAGAGGAGGTGATTCAAAAAGAAGAGAAAACGGCATGGAAGGCCGTTAGTTCTAGTGCAT
CCACTTCAAAGCGTATAGCAAAACCTTTAAAAGTAAAGGAAATTGACAGCGCAGAGGAAATCCGCATGAATACCTTAGAT
GGGGAATTGAATCGCGTGTTAGGCGGTGGATTAGTCCCTGGATCGATGGTTTTATTAGGAGGAGAACCCGGAATTGGAAA
AAGTACGTTGCTTTTGCAAATATCTTTGCGTTTACCTTTTAAAGTACTTTATGTTTCTGGAGAAGAAAGCCAGAAGCAAA
TCAAAATGCGTGCAGAACGCATCAATCCCAATAATGAAAATTGTTATATCTTAACAGAAACCAATACCCAAAATATCTTT
CGTCAGATTGAAGAAATTCAACCAGATGTGTTGATTATTGACTCTATTCAAACTTTGCATACGGATTATATTGAATCCTC
TGCAGGAACAGTTTCTCAAATTAAAGAATGTACAGCAGAACTGACGAAGTTTGCTAAAGAGACGGGTACTCCCGTGTTAA
TTATTGGACATATTACAAAAGATGGAAGTATTGCTGGTCCGAAAATGTTGGAGCATATGGTGGATACTGTGCTGCAATTT
GAAGGAGATCGCAATCACGTGTACCGTATTTTACGCGCTAATAAAAACCGTTTTGGATCTACTGCTGAATTGGGTATTTA
CGAAATGCAAGGCAGTGGATTGAGAGAAGTTTCCAATCCATCGGAAATTTTAATTTCCCATAAAGACGAAGAATTATCGG
GAACAGCGATTGCTGCAACTTTAGAGGGGATGCGTCCCTTGATGGTAGAGGTACAATCGTTGGTTAGTACAGCAGTGTAT
GGAACGCCGCAACGCAGTGCTACGGGATATAATCTGAAGCGATTGAATATGTTGTTAGCGGTATTAGAAAAAAGAGCGGG
ATTCCGCTTAGGACAGAAAGACGTTTTCTTAAATATAACAGGAGGAATATCGGTTGATGACCCTGCTATTGATTTAGGTG
TGGTGGCCGCAATTCTCTCTTCAGATCAAGATATCTCCATTCAAAAAGGAGTAACATTTGCAGGAGAAGTAGGGCTTTCA
GGAGAGATCCGACCGATTAATCGTGTAGATCAACGCATTCAAGAAGCGGAGAAATTAGGTTTTTCGGAGATACTTGTTTC
CAAATACAATAAGATTTCATACACGGGAACAGGAATAAAAGTTATTTTAGTAACGAAGATCGAGGATGTGGTCGAACACC
TCTTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)

AAA domain (AAA_25)

(82-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378U5H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.435

100

0.509
  radA Streptococcus pneumoniae Rx1

50

100

0.507
  radA Streptococcus pneumoniae D39

50

100

0.507
  radA Streptococcus pneumoniae R6

50

100

0.507
  radA Streptococcus pneumoniae TIGR4

50

100

0.507
  radA Streptococcus mitis NCTC 12261

49.891

100

0.502
  radA Streptococcus mitis SK321

49.891

100

0.502