Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K6972_RS00205 Genome accession   NZ_CP082203
Coordinates   28510..29292 (+) Length   260 a.a.
NCBI ID   WP_044676044.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23510..34292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS00185 (K6972_00185) mreD 24331..24846 (+) 516 WP_024385106.1 rod shape-determining protein MreD -
  K6972_RS00190 (K6972_00190) pcsB 24931..26187 (+) 1257 WP_222759550.1 peptidoglycan hydrolase PcsB -
  K6972_RS00195 (K6972_00195) - 26290..27258 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  K6972_RS00200 (K6972_00200) - 27345..28523 (+) 1179 WP_024385104.1 pyridoxal phosphate-dependent aminotransferase -
  K6972_RS00205 (K6972_00205) recO 28510..29292 (+) 783 WP_044676044.1 DNA repair protein RecO Machinery gene
  K6972_RS00210 (K6972_00210) plsX 29289..30296 (+) 1008 WP_222812604.1 phosphate acyltransferase PlsX -
  K6972_RS00215 (K6972_00215) - 30289..30537 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  K6972_RS00220 (K6972_00220) purC 30655..31362 (+) 708 WP_222759554.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30502.93 Da        Isoelectric Point: 5.4193

>NTDB_id=527099 K6972_RS00205 WP_044676044.1 28510..29292(+) (recO) [Streptococcus suis strain NJ3]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKS
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGVSLNFHECAFCHRVGQ
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=527099 K6972_RS00205 WP_044676044.1 28510..29292(+) (recO) [Streptococcus suis strain NJ3]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAGT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTTTTTGCTTTTTTGGTCAAAACCTTGGACTTGATGGAGTCAGGTCTGGATTATGAAATTTTAACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGTGTTAGTTTGAATTTTCATGAGTGTGCTTTCTGTCATCGAGTAGGTCAG
CCTTTTGACTATTCCTACAAGTACAGCGGGGTTTTATGTCCGCAACACTATCAACAAGATGAACGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCTATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665