Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   K6976_RS09010 Genome accession   NZ_CP082202
Coordinates   1862178..1865003 (-) Length   941 a.a.
NCBI ID   WP_222759321.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857178..1870003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS08985 (K6976_08985) - 1858525..1859490 (+) 966 WP_002938271.1 LacI family DNA-binding transcriptional regulator -
  K6976_RS08990 (K6976_08990) nusB 1859568..1859987 (-) 420 WP_002938276.1 transcription antitermination factor NusB -
  K6976_RS08995 (K6976_08995) - 1859977..1860369 (-) 393 WP_002942446.1 Asp23/Gls24 family envelope stress response protein -
  K6976_RS09000 (K6976_09000) efp 1860397..1860954 (-) 558 WP_002942436.1 elongation factor P -
  K6976_RS09005 (K6976_09005) - 1861018..1862079 (-) 1062 WP_044684303.1 Xaa-Pro peptidase family protein -
  K6976_RS09010 (K6976_09010) uvrA 1862178..1865003 (-) 2826 WP_222759321.1 excinuclease ABC subunit UvrA Machinery gene
  K6976_RS09015 (K6976_09015) - 1866204..1867148 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  K6976_RS09020 (K6976_09020) - 1867164..1867820 (+) 657 WP_024385182.1 DUF1129 domain-containing protein -
  K6976_RS09025 (K6976_09025) rpsR 1868409..1868648 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  K6976_RS09030 (K6976_09030) ssbA 1868681..1869175 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  K6976_RS09035 (K6976_09035) rpsF 1869187..1869477 (-) 291 WP_002942403.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103866.01 Da        Isoelectric Point: 5.9984

>NTDB_id=527078 K6976_RS09010 WP_222759321.1 1862178..1865003(-) (uvrA) [Streptococcus suis strain SS389]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKDGIRSRLFDSIEAALRIADGYVIIDTMDE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEKGLHIGQLSDLSVADHLEVIENLTLSENEATIATPIVKEIKDRLTFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGQRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVAENPASFTGQYLKTKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=527078 K6976_RS09010 WP_222759321.1 1862178..1865003(-) (uvrA) [Streptococcus suis strain SS389]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTAAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTTGATACCTTGTATGCCGAAGGTCAACGCCGTT
ATGTAGAGTCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGACAAACCGGATGTGGATTCCATAGAGGGGCTC
AGCCCTGCTATTTCCATAGACCAAAAAACAACCTCGCGTAACCCGCGTTCGACGGTTGGAACGGCGACGGAAATCAATGA
CTATCTCCGCCTGCTTTATGCTCGGGTCGGGGTGCCTTACTGTATCAATGGGCACGGGGCGATTGCGGCTTCTTCGGTGG
AACAAATCGTTGATGAGGTCTTGGAATTGCCAGAACGCCAGCGTTTGCAGATCCTAGCTCCGATTGTTCGTAAGAAAAAG
GGGCAACACAAGACCATTTTTGAAAAAGTGCAGAAGGACGGCTATGTTCGGGTCCGTGTCAATGGCGATGTCTATGATGT
GTCGGAAGTGCCTGAGTTGTCCAAGAGCAAGGCTCATAACATTGAGGTCGTGGTCGATCGGATTGTGATCAAAGATGGCA
TTCGCTCGCGACTTTTTGACTCCATTGAGGCGGCTCTGCGGATTGCGGACGGTTATGTCATCATCGATACCATGGATGAG
AAGGAATTGCTTTTCTCCGAGTACTATGCCTGTCCAGTTTGTGGCTTTACGGTGCCAGAGTTGGAGCCTCGCCTCTTCTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGATTGTGACGGTTTGGGCATGAAGCTGGAAGTGGATACAGATTTGATTGTCC
CAGATGCCAGCAAGACCTTGCGTGAGGGTGCTTTGGCTCCTTGGAATCCAATCTCTTCCAACTATTATCCTCAGATGCTG
GAGCAGGCTATGAACCATTTTGGTGTGGATATGGACAAGCCTTTCGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAATGGTTCTGACGGGAAGGAATTCCATTTCCATTATGAAAATGAGTTCGGTGGAGTGCGTGATATTGACATTCCATTTG
AAGGCTTGATTACTAACATTAACCGCCGCTACCGTGAAACCAATAGTGATTACACACGGACAGTCATGAAGACTTACATG
AATGAGTTGACCTGTGGGACCTGCCACGGCTACCGCCTCAATGACCAAGCCTTATCTGTCAAGGTCGGTGGTGAGAAGGG
ACTTCATATCGGGCAGTTGTCTGACTTATCCGTAGCGGATCATCTGGAAGTCATTGAAAATCTGACCTTGTCTGAAAATG
AAGCGACGATTGCTACGCCAATTGTCAAGGAAATCAAGGATCGCCTGACTTTCCTCAACAACGTTGGTCTTAACTACCTG
ACGCTGTCCCGAGCAGCTGGGACCCTATCAGGTGGTGAGAGTCAGCGGATTCGTTTGGCGACTCAGATTGGCTCAAACCT
GTCTGGTGTCCTTTACATCTTGGATGAGCCGTCAATTGGTCTGCACCAGCGGGACAATGACCGTCTGATTGCTAGTCTTA
AGAAAATGCGTGATTTGGGCAATACATTGATTGTGGTGGAGCATGATGAGGACACCATGCGGGAGGCGGACTGGTTGATT
GATATCGGTCCAGGTGCAGGTGTGTTTGGTGGAGAAATCGTGGCTTCTGGGACACCTGCCCAGGTGGCTAAAAATAAAAA
ATCTATTACAGGCCAGTACCTGTCTGGCAAACGTGAAATTCCAGTTCCTCTAGAACGCCGTGTTGGAAATGGTCGTTTCC
TGGAGGTAACAGGTGCCAAAGAAAACAACCTGCAAGATGTAACGGTTCGTTTCCCACTCGGAAAATTTGTGGCGGTGACA
GGGGTGTCTGGCTCTGGTAAGTCAACTCTGGTCAACTCCATTTTGAAAAAAGCCATTGCTCAGAAGCTCAATCGCAATTC
GGACAAGCCAGGCAAGTTCAAGTCTATTTCTGGAATTGAACATTTGGATCGCCTGATTGATATTGACCAAAGCCCTATTG
GACGGACACCGCGTTCCAACCCAGCCACTTACACAGGTGTCTTTGACGATATTCGAGACCTCTTTGCCCAGACCAATGAA
GCCAAAATCCGTGGCTACAAGAAGGGACGCTTCTCCTTTAACGTCAAAGGTGGTCGTTGTGAAGCTTGTTCTGGTGACGG
AATCATCAAGATCGAAATGCACTTCCTTCCAGACGTATTTGTCCCATGTGAAGTCTGCCATGGTCAACGCTATAATTCTG
AAACCTTGGAAGTACACTACAAGGAGAAAAATATTGCTCAGGTCCTTGATATGACGGTCAATGATGCGGTCGAATTCTTC
AAGCATATTCCAAAAATTGAACGGAAGCTCCGCACCATTCAAGATGTGGGCTTGGGTTATGTTACTCTTGGACAACCTGC
GACAACCCTGTCAGGTGGTGAAGCCCAACGGATGAAATTGGCATCTGAACTTCACAAGCGATCAACTGGTAAGTCTTTGT
ATATCTTGGATGAGCCAACGACAGGGCTGCATACCGAAGACATTGCTCAATTGTTAAAAGTTTTAGCCCGCTTTGTTGAT
GATGGCAATACCGTGCTGGTCATCGAGCACAATCTGGATGTTATCAAGACAGCCGACCACATTATCGACATGGGGCCAGA
AGGCGGTGTCGGCGGTGGTACCGTTGTTGCGACAGGAACGCCAGAAGAAGTAGCGGAAAACCCAGCCAGCTTTACAGGCC
AGTATTTGAAAACTAAGTTGAAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.362

99.894

0.893
  uvrA Streptococcus pneumoniae TIGR4

89.362

99.894

0.893
  uvrA Streptococcus pneumoniae D39

89.362

99.894

0.893