Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K6976_RS07820 Genome accession   NZ_CP082202
Coordinates   1602078..1602728 (-) Length   216 a.a.
NCBI ID   WP_024384330.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597078..1607728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS07815 (K6976_07815) - 1600716..1602077 (-) 1362 WP_024384329.1 HAMP domain-containing sensor histidine kinase -
  K6976_RS07820 (K6976_07820) scnR 1602078..1602728 (-) 651 WP_024384330.1 response regulator transcription factor Regulator
  K6976_RS07825 (K6976_07825) ccpA 1603796..1604800 (-) 1005 WP_002935813.1 catabolite control protein A Regulator
  K6976_RS07830 (K6976_07830) - 1605010..1606095 (+) 1086 WP_024384331.1 Xaa-Pro peptidase family protein -
  K6976_RS11080 - 1606267..1606491 (-) 225 WP_315985281.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24594.72 Da        Isoelectric Point: 4.9774

>NTDB_id=527071 K6976_RS07820 WP_024384330.1 1602078..1602728(-) (scnR) [Streptococcus suis strain SS389]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFDGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=527071 K6976_RS07820 WP_024384330.1 1602078..1602728(-) (scnR) [Streptococcus suis strain SS389]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGCGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTGACGGTGGACAGGCATTAGAAGAAATCCAGAAAATGGAATTTGATCTGCTTATTTTGGATATTA
TGGTGCCGACGATGACAGGATTGGAGTTATTGACAGCAGTTCGGAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCG
TTAAGTGATGAGTATACTCAATTAATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTTTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGAATAGGTGACATCCTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATATTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.937

100

0.38