Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   K6976_RS06905 Genome accession   NZ_CP082202
Coordinates   1404458..1404940 (+) Length   160 a.a.
NCBI ID   WP_202846202.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1399458..1409940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS06875 (K6976_06875) - 1399487..1400635 (+) 1149 WP_222759151.1 cobalamin-independent methionine synthase II family protein -
  K6976_RS06880 (K6976_06880) - 1400706..1402016 (-) 1311 WP_222759152.1 GntP family permease -
  K6976_RS06885 (K6976_06885) folK 1402067..1402555 (-) 489 WP_105212406.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6976_RS06890 (K6976_06890) folB 1402552..1402914 (-) 363 WP_024400723.1 dihydroneopterin aldolase -
  K6976_RS06895 (K6976_06895) folP 1402907..1403719 (-) 813 WP_222759153.1 dihydropteroate synthase -
  K6976_RS06900 (K6976_06900) folE 1403728..1404291 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  K6976_RS06905 (K6976_06905) mutX 1404458..1404940 (+) 483 WP_202846202.1 8-oxo-dGTP diphosphatase Machinery gene
  K6976_RS06910 (K6976_06910) - 1404984..1405661 (-) 678 WP_222759155.1 DUF4956 domain-containing protein -
  K6976_RS06915 (K6976_06915) - 1405648..1406391 (-) 744 WP_024401187.1 polyphosphate polymerase domain-containing protein -
  K6976_RS06920 (K6976_06920) - 1406584..1406886 (+) 303 WP_105136012.1 hypothetical protein -
  K6976_RS06925 (K6976_06925) - 1407012..1407278 (-) 267 WP_222759157.1 DUF2087 domain-containing protein -
  K6976_RS06930 (K6976_06930) - 1407283..1407813 (-) 531 WP_105136010.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18413.70 Da        Isoelectric Point: 4.4540

>NTDB_id=527059 K6976_RS06905 WP_202846202.1 1404458..1404940(+) (mutX) [Streptococcus suis strain SS389]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQAWLLENTPFFSACFRYDGDSLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=527059 K6976_RS06905 WP_202846202.1 1404458..1404940(+) (mutX) [Streptococcus suis strain SS389]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAACTAGAACCTGGCGAAACACCACAGGCTTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTTTGATCGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACTTGGGAAGGCGATCGCCATTTTCAAGCATGGCTATTAG
AGAACACCCCCTTCTTTTCCGCTTGCTTCCGCTATGACGGGGATAGCTTGCTGGATTACAGCGTTGATTTTTATGAGGAG
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

78.431

95.625

0.75