Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   K6976_RS05715 Genome accession   NZ_CP082202
Coordinates   1148767..1150503 (-) Length   578 a.a.
NCBI ID   WP_222759053.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143767..1155503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS05700 (K6976_05700) - 1144614..1145900 (-) 1287 WP_222759050.1 homoserine dehydrogenase -
  K6976_RS05705 (K6976_05705) - 1146005..1146928 (+) 924 WP_222759051.1 polysaccharide deacetylase family protein -
  K6976_RS05710 (K6976_05710) rcrQ 1146989..1148758 (-) 1770 WP_222759052.1 ABC transporter ATP-binding protein Regulator
  K6976_RS05715 (K6976_05715) rcrP 1148767..1150503 (-) 1737 WP_222759053.1 ABC transporter ATP-binding protein Regulator
  K6976_RS05720 (K6976_05720) - 1150579..1150821 (-) 243 WP_012028079.1 KH domain-containing protein -
  K6976_RS05725 (K6976_05725) rpsP 1150843..1151115 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  K6976_RS05730 (K6976_05730) - 1151240..1151548 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  K6976_RS05735 (K6976_05735) pcp 1151548..1152195 (-) 648 WP_024377828.1 pyroglutamyl-peptidase I -
  K6976_RS05740 (K6976_05740) - 1152192..1152953 (-) 762 WP_222759054.1 class I SAM-dependent methyltransferase -
  K6976_RS05745 (K6976_05745) - 1153024..1153338 (-) 315 WP_044667780.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65194.49 Da        Isoelectric Point: 5.1991

>NTDB_id=527053 K6976_RS05715 WP_222759053.1 1148767..1150503(-) (rcrP) [Streptococcus suis strain SS389]
MNLIWTYLKKYPKWIALDLVGAFLFVVVNLGLPTFLARMIDQGITKNDVGQLYYWAGMMVLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAIPFLIFVIYYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALEPLRTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=527053 K6976_RS05715 WP_222759053.1 1148767..1150503(-) (rcrP) [Streptococcus suis strain SS389]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGGTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAAAATGATGTTGGCCAGCTCTATT
ACTGGGCGGGGATGATGGTACTGATTGTCCTGCTCGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAATTA
ACTACCAATATTGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTACTCTCATCATGAGTATGAGCAGAT
TGGTGTCTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCCTCTGTCATCATGACCTTGGTTACGAGTCCAAGTTTAGCATGGACAGTGGCG
GTCGCTATTCCCTTCCTTATTTTCGTTATCTATTATGTTGCGACTAAAACACGCCCCTTATCCGAAAAACAACAAAAACG
GTTGGATACAATCAACCAGTATGTTCGTGAGAACTTAATGGGACTTCGTGTCATTCGTGCATTTACGCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAAGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGTCTGACAGAA
CCTCTCTTTGTCCAGATTATCATAGCAATGATTGTGGCCATTGTCTGGTTTGCTTTGGAGCCCTTGAGAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGGGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGT
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAATTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGTGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCTGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTCTGAAGGAAGTGACGGAAAATGCGACAGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398