Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K6976_RS05710 Genome accession   NZ_CP082202
Coordinates   1146989..1148758 (-) Length   589 a.a.
NCBI ID   WP_222759052.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1141989..1153758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS05690 (K6976_05690) murB 1142607..1143515 (-) 909 WP_105257560.1 UDP-N-acetylmuramate dehydrogenase -
  K6976_RS05695 (K6976_05695) thrB 1143750..1144610 (-) 861 WP_011922331.1 homoserine kinase -
  K6976_RS05700 (K6976_05700) - 1144614..1145900 (-) 1287 WP_222759050.1 homoserine dehydrogenase -
  K6976_RS05705 (K6976_05705) - 1146005..1146928 (+) 924 WP_222759051.1 polysaccharide deacetylase family protein -
  K6976_RS05710 (K6976_05710) rcrQ 1146989..1148758 (-) 1770 WP_222759052.1 ABC transporter ATP-binding protein Regulator
  K6976_RS05715 (K6976_05715) rcrP 1148767..1150503 (-) 1737 WP_222759053.1 ABC transporter ATP-binding protein Regulator
  K6976_RS05720 (K6976_05720) - 1150579..1150821 (-) 243 WP_012028079.1 KH domain-containing protein -
  K6976_RS05725 (K6976_05725) rpsP 1150843..1151115 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  K6976_RS05730 (K6976_05730) - 1151240..1151548 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  K6976_RS05735 (K6976_05735) pcp 1151548..1152195 (-) 648 WP_024377828.1 pyroglutamyl-peptidase I -
  K6976_RS05740 (K6976_05740) - 1152192..1152953 (-) 762 WP_222759054.1 class I SAM-dependent methyltransferase -
  K6976_RS05745 (K6976_05745) - 1153024..1153338 (-) 315 WP_044667780.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65770.82 Da        Isoelectric Point: 5.7950

>NTDB_id=527052 K6976_RS05710 WP_222759052.1 1146989..1148758(-) (rcrQ) [Streptococcus suis strain SS389]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVDGAQINYSYIAIMLALYALR
ALMYEIGAYGSTYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAMFMCFWLDVSLALVVVTLVPVTYFGSKFVTGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDEFDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRKISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLGDKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=527052 K6976_RS05710 WP_222759052.1 1146989..1148758(-) (rcrQ) [Streptococcus suis strain SS389]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTATTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGATATGGCAAATGGAGTAGACGGAGCGCAGATTAACTATTCCTACATTGCTATCATGCTTGCGCTATATGCCCTCCGT
GCCCTTATGTATGAAATCGGCGCCTATGGTTCTACCTATTTCATGACTAAGGCGGTACAGGGAGCAACCAAGGAACTGCG
GCAGGATTTGAGTCACAAGATTAACAAAATTCCCGTTTCCTATTTTGACAAGCACCAATATGGTGATTTACTCGGGCGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTACAACAAAGTTTTCTTCAGCTCGTCAATGCCGTCCTGACTCTCTCT
CTAGCCATGTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTCGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCACGGGAAAATCCCAGCCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGTACATTGACGGTTGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAATTTGATGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTCGGCTATTCAGAAGACAAGCCACTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCTGGTGCTATCAAGGTGGATGGTCAGGATATTAGAAAGATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCCTGGCTCTACGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCCAAAGCAGCTAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCAGATCCTGCTATTCT
GATTCTTGACGAAGCAACTTCTTCAGTTGATACTCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAGG
GGCGGACAAGTTTCGTCATCGCCCATCGCTTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCACGAAAGTCTTTTGGGTGACAAAGGTTTCTATTATAATCTGTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.197

99.83

0.431