Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I97_RS07760 Genome accession   NZ_CP068089
Coordinates   1873036..1874421 (-) Length   461 a.a.
NCBI ID   WP_075990497.1    Uniprot ID   -
Organism   Sphingobacterium multivorum strain FDAARGOS_1140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1868036..1879421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I97_RS07745 (I6I97_07745) nagB 1868908..1870836 (-) 1929 WP_112375205.1 glucosamine-6-phosphate deaminase -
  I6I97_RS07750 (I6I97_07750) - 1870978..1872126 (-) 1149 WP_201639920.1 methionine aminotransferase -
  I6I97_RS07755 (I6I97_07755) - 1872199..1872882 (+) 684 WP_201639921.1 peroxiredoxin -
  I6I97_RS07760 (I6I97_07760) radA 1873036..1874421 (-) 1386 WP_075990497.1 DNA repair protein RadA Machinery gene
  I6I97_RS07765 (I6I97_07765) - 1874660..1875820 (-) 1161 WP_201639922.1 dipeptidase -
  I6I97_RS07770 (I6I97_07770) - 1875817..1877541 (-) 1725 WP_201639923.1 serine hydrolase -
  I6I97_RS07775 (I6I97_07775) xseA 1877738..1879024 (+) 1287 WP_201639924.1 exodeoxyribonuclease VII large subunit -
  I6I97_RS07780 (I6I97_07780) xseB 1879067..1879288 (+) 222 WP_075990493.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50568.93 Da        Isoelectric Point: 7.0182

>NTDB_id=527025 I6I97_RS07760 WP_075990497.1 1873036..1874421(-) (radA) [Sphingobacterium multivorum strain FDAARGOS_1140]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKTSSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGVRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=527025 I6I97_RS07760 WP_075990497.1 1873036..1874421(-) (radA) [Sphingobacterium multivorum strain FDAARGOS_1140]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAACTGTGGCTACGAATCTCCCAAATGGATGGGACAATGCCCTTCTTG
TAAGCAATGGAATAGTTTTGTTGAGGAAGTCGTCGAAAAGACGAGCTCAAAAGTGCCCGAATGGCGTAGTTCTACCACAG
GTGGAAGCACGAAAAGAGCGAATAAAGCTGCGATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAGTTTAACCGGGTTCTTGGTGGTGGTATCGTTCCGGGTTCATTGGTACTTATCGGAGGCGAACCTGGTATTGG
GAAGTCTACGTTGATGTTACAGCTCGCGTTATCGATCCCACAAGTCAAGACACTTTATATTTCTGGGGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCAGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCGACTCAA
AATATTTTCAAGCAGATCGAGACGGTACAGCCGAATGTCATTGTCATAGATTCTATACAGACTTTACATTCCGCACAAAT
TGAATCGGCGCCAGGATCGGTTTCTCAGGTACGCGAATGTACCGCAGAATTGCTGCGGTTTGCAAAAGAAACCAGTACAC
CAGTTTTTATTGTAGGACATATTACCAAGGACGGATCTATTGCAGGTCCCAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAGGGTGATCGTCATCATGTATACCGAATTTTACGGGCCGTAAAGAATCGTTTTGGATCTGCTTCAGAACT
GGGTATTTATGAAATGCAGGGGTCGGGGCTTAGGGAAGTGTCGAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGCGTTTCCATTGCGGCGATGCTCGAAGGAGTGCGCCCTATGATGATTGAAGTGCAGGCACTGGTGAGTAAT
TCGGCGTTTGGAAATGCTCAGCGCTCTTCTACAGGCTACGATACGAAACGATTAAATATGCTGCTGGCTGTTTTGGAGAA
ACGCTTTGGCTTTAGGTTAAGTGCACAGGATGTGTTTTTGAATATTGCCGGTGGGTTACGTGTCGAAGATCCTGCGATCG
ATTTGGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATCGCGATTCGATCCAATCTGACTTTTGCCGGTGAGGTT
GGTTTATCGGGTGAGATAAGGGCCGTAAATCGTATTGAACAGCGTATACAGGAGGCCGAGAAGTTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATAATATTGCCATTCGTCCGGTTGCCAAATTGGAGG
ATATCTTCAGTGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(75-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

53.725

96.095

0.516