Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J00_RS17550 Genome accession   NZ_CP068086
Coordinates   3990792..3992177 (+) Length   461 a.a.
NCBI ID   WP_115045987.1    Uniprot ID   -
Organism   Sphingobacterium multivorum strain FDAARGOS_1143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3985792..3997177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J00_RS17530 (I6J00_17530) xseB 3986027..3986248 (-) 222 WP_070562394.1 exodeoxyribonuclease VII small subunit -
  I6J00_RS17535 (I6J00_17535) xseA 3986298..3987584 (-) 1287 WP_115045992.1 exodeoxyribonuclease VII large subunit -
  I6J00_RS17540 (I6J00_17540) - 3987815..3989539 (+) 1725 WP_115045991.1 serine hydrolase -
  I6J00_RS17545 (I6J00_17545) - 3989536..3990696 (+) 1161 WP_115045989.1 dipeptidase -
  I6J00_RS17550 (I6J00_17550) radA 3990792..3992177 (+) 1386 WP_115045987.1 DNA repair protein RadA Machinery gene
  I6J00_RS17555 (I6J00_17555) - 3992331..3993014 (-) 684 WP_115045986.1 peroxiredoxin -
  I6J00_RS17560 (I6J00_17560) - 3993087..3994235 (+) 1149 WP_115045984.1 methionine aminotransferase -
  I6J00_RS17565 (I6J00_17565) nagB 3994377..3996305 (+) 1929 WP_115045982.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50670.10 Da        Isoelectric Point: 7.3276

>NTDB_id=527020 I6J00_RS17550 WP_115045987.1 3990792..3992177(+) (radA) [Sphingobacterium multivorum strain FDAARGOS_1143]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKASSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIERVQPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGMRPMMIEVQALVSN
TAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEI
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=527020 I6J00_RS17550 WP_115045987.1 3990792..3992177(+) (radA) [Sphingobacterium multivorum strain FDAARGOS_1143]
ATGGCAAAATCAAAATCTGCATACTTCTGTCAAAACTGTGGCTACGAGTCTCCCAAATGGATGGGGCAATGCCCTTCTTG
TAAACAATGGAATAGTTTTGTTGAGGAAGTCGTTGAAAAGGCGAGTTCAAAAGTTCCTGAATGGCGTAGTTCTACCACAG
GAGGAAGCACAAAGAGAGCGAATAAAGCTGCGATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAGTTTAACCGGGTTCTTGGCGGCGGTATTGTTCCAGGGTCATTGGTCCTTATCGGAGGCGAACCGGGTATTGG
GAAGTCGACGTTGATGTTACAGCTCGCTTTATCGATTCCACAAGTGAAGACCCTTTATATTTCTGGGGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCAGAACGATTGTCACAATCATCCAAAGCCAATTGCTATATCCTTACCGAGACATCTACTCAA
AATATTTTCAAGCAGATCGAGAGGGTACAGCCCAATGTCATTGTCATCGATTCCATACAGACTCTGCACTCTTCCCAAAT
TGAATCTGCTCCAGGGTCGGTTTCTCAGGTACGCGAATGTACCGCAGAGTTGCTGCGGTTTGCAAAGGAAACGAGTACAC
CAGTTTTTATTGTAGGGCATATTACCAAGGATGGGTCTATTGCAGGTCCCAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAAGGTGATCGCCACCATGTCTACCGAATTTTACGGGCCGTAAAGAATCGCTTTGGGTCTGCTTCAGAACT
CGGGATTTATGAAATGCAGGGGTCGGGACTGCGGGAAGTGTCGAATCCTTCGGAGATTATGATTTCCCAACGCGATGAAC
CTGTCAGTGGGGTTTCCATTGCGGCGATGCTCGAAGGAATGCGCCCTATGATGATTGAAGTGCAGGCGCTGGTGAGTAAT
ACGGCATTTGGAAATGCACAGCGCTCTTCCACAGGTTACGACACGAAGCGATTAAATATGCTGTTGGCTGTTTTAGAGAA
ACGCTTTGGTTTTAGGTTAAGCGCACAGGATGTATTTTTGAATATTGCCGGTGGGTTGCGTGTTGAAGATCCTGCGATCG
ATTTGGCTGTCGTTGTTGCAATTATTTCTTCACAACAGGATATCGCGATTCGCTCCAATCTGACTTTCGCAGGTGAGATT
GGTTTATCGGGCGAGATCAGAGCTGTAAACCGTATAGAACAGCGGATACAGGAGGCTGAGAAGCTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGACGCTAAAAAATATAATATTGCCATCCGTCCGGTTGCCAAATTGGAGG
ACATCTTCAGTGCCTTGTTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

52.928

100

0.529
  radA Streptococcus mitis NCTC 12261

52.928

100

0.529
  radA Streptococcus pneumoniae Rx1

52.928

100

0.529
  radA Streptococcus pneumoniae R6

52.928

100

0.529
  radA Streptococcus pneumoniae TIGR4

52.928

100

0.529
  radA Streptococcus mitis SK321

52.711

100

0.527
  radA Bacillus subtilis subsp. subtilis str. 168

54.176

96.095

0.521