Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J01_RS08715 Genome accession   NZ_CP068084
Coordinates   2090226..2091611 (+) Length   461 a.a.
NCBI ID   WP_002998249.1    Uniprot ID   D7VIJ3
Organism   Sphingobacterium spiritivorum strain FDAARGOS_1144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085226..2096611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J01_RS08690 (I6J01_08690) - 2086160..2088322 (-) 2163 WP_002998261.1 peptidase domain-containing ABC transporter -
  I6J01_RS08695 (I6J01_08695) - 2088378..2088632 (-) 255 WP_002998259.1 hypothetical protein -
  I6J01_RS08700 (I6J01_08700) - 2088735..2089397 (+) 663 WP_002998257.1 rhomboid family intramembrane serine protease -
  I6J01_RS08705 (I6J01_08705) - 2089404..2089553 (-) 150 WP_002998255.1 hypothetical protein -
  I6J01_RS08710 (I6J01_08710) - 2089726..2090016 (+) 291 WP_002998253.1 helix-turn-helix domain-containing protein -
  I6J01_RS08715 (I6J01_08715) radA 2090226..2091611 (+) 1386 WP_002998249.1 DNA repair protein RadA Machinery gene
  I6J01_RS08720 (I6J01_08720) - 2091748..2092440 (-) 693 WP_002998246.1 TlpA disulfide reductase family protein -
  I6J01_RS08725 (I6J01_08725) - 2092763..2095252 (+) 2490 WP_037460396.1 DUF5686 and carboxypeptidase regulatory-like domain-containing protein -
  I6J01_RS08730 (I6J01_08730) - 2095327..2096478 (+) 1152 WP_002998243.1 methionine aminotransferase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50626.19 Da        Isoelectric Point: 7.0182

>NTDB_id=527010 I6J01_RS08715 WP_002998249.1 2090226..2091611(+) (radA) [Sphingobacterium spiritivorum strain FDAARGOS_1144]
MAKSKSAYFCQNCGYESPKWLGQCPSCKQWNSFVEEVVEKGNSKVPEWRSTTTTSVSKRANKAAIIHEIIYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIEAVQPDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDAPVSGVSIAAMLEGMRPMMIEVQALVSN
SAFGTAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDMPIKTTIAFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGIFISKFNIKGLDPKKYNIAIRPMATLEDIFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=527010 I6J01_RS08715 WP_002998249.1 2090226..2091611(+) (radA) [Sphingobacterium spiritivorum strain FDAARGOS_1144]
ATGGCGAAAAGTAAATCAGCATATTTCTGTCAAAACTGTGGATATGAATCCCCGAAATGGTTAGGTCAGTGTCCTTCCTG
TAAACAATGGAACTCATTTGTAGAGGAAGTGGTCGAGAAGGGTAATTCTAAAGTGCCCGAATGGCGGAGTACGACTACCA
CTTCTGTTTCCAAACGGGCGAATAAAGCAGCAATTATACACGAAATTATTTATCAGGACGAGTCCCGGATATTGACCCCT
GATCAGGAGTTTAACAGAGTGCTGGGAGGAGGAATTGTACCGGGATCATTAGTGTTGATCGGAGGAGAGCCGGGTATCGG
AAAATCTACATTGATGCTTCAGCTGGCACTTTCCATTCCTCAGGTGAAAACCCTTTATATTTCGGGTGAGGAGAGTGAAC
AGCAGATCAAGATGCGGGCAGAGCGCCTTTCCCAATCTTCAAAAGCTAATTGTTATATACTGACAGAGACATCCACACAA
AATATATTTAAACAGATAGAGGCTGTACAGCCGGATGTTATTGTAATAGATTCCATCCAGACCTTACATTCCTCACAGAT
TGAATCTGCTCCGGGATCTGTATCTCAGGTAAGAGAATGTACGGCTGAACTTCTCCGGTTTGCAAAAGAAACCAGTACTC
CTGTATTTATTGTTGGTCATATTACTAAAGACGGATCTATTGCTGGCCCAAAGGTGTTGGAGCATATGGTGGATACGGTT
CTGCAGTTTGAAGGAGATCGTCATCATGTATACAGAATTCTACGGGCAGTAAAGAATAGGTTCGGATCTGCATCTGAACT
TGGTATCTATGAGATGCAGGGGTCGGGTTTGAGAGAAGTTTCTAATCCGTCTGAGATTATGATTTCTCAGCGGGATGCAC
CTGTGAGCGGTGTTTCTATTGCTGCAATGCTTGAAGGCATGCGCCCTATGATGATAGAGGTGCAGGCATTGGTGAGTAAT
TCTGCATTTGGTACCGCACAACGATCTTCTACAGGTTATGATACTAAGCGATTAAATATGTTGCTGGCTGTTCTTGAAAA
ACGGTTTGGATTTCGTCTGAGTGCACAGGATGTCTTTCTGAATATTGCCGGCGGTTTACGTGTAGAAGATCCCGCTATTG
ATCTTGCTGTGATTGTTGCGATTATCTCTTCGCAACAGGATATGCCGATAAAAACAACGATTGCTTTTGCCGGAGAAGTA
GGACTGTCCGGAGAAATACGGGCTGTAAACCGAATTGAGCAACGCATTGCTGAAGCAGAAAAACTGGGTTTTGAAGGAAT
TTTTATATCCAAGTTCAATATAAAGGGTCTTGACCCGAAAAAGTATAATATTGCAATACGGCCTATGGCCACATTAGAGG
ATATTTTCCGGGCCTTATTTGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(73-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7VIJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

52.268

100

0.525
  radA Streptococcus pneumoniae Rx1

52.155

100

0.525
  radA Streptococcus pneumoniae R6

52.155

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.155

100

0.525
  radA Streptococcus pneumoniae D39

52.155

100

0.525
  radA Streptococcus mitis SK321

52.052

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

52.052

100

0.523