Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J02_RS07590 Genome accession   NZ_CP068083
Coordinates   1852017..1853402 (+) Length   461 a.a.
NCBI ID   WP_201681134.1    Uniprot ID   -
Organism   Sphingobacterium spiritivorum strain FDAARGOS_1145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847017..1858402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J02_RS07565 (I6J02_07565) - 1848015..1850171 (-) 2157 WP_201681130.1 peptidase domain-containing ABC transporter -
  I6J02_RS07570 (I6J02_07570) - 1850228..1850416 (-) 189 WP_201681131.1 hypothetical protein -
  I6J02_RS07575 (I6J02_07575) - 1850581..1851243 (+) 663 WP_201681132.1 rhomboid family intramembrane serine protease -
  I6J02_RS07580 (I6J02_07580) - 1851250..1851399 (-) 150 WP_201681133.1 molybdenum ABC transporter substrate-binding protein -
  I6J02_RS07585 (I6J02_07585) - 1851571..1851861 (+) 291 WP_002998253.1 helix-turn-helix domain-containing protein -
  I6J02_RS07590 (I6J02_07590) radA 1852017..1853402 (+) 1386 WP_201681134.1 DNA repair protein RadA Machinery gene
  I6J02_RS07595 (I6J02_07595) - 1853519..1854211 (-) 693 WP_201681135.1 TlpA family protein disulfide reductase -
  I6J02_RS07600 (I6J02_07600) - 1854409..1856898 (+) 2490 WP_201681136.1 DUF5686 and carboxypeptidase regulatory-like domain-containing protein -
  I6J02_RS07605 (I6J02_07605) - 1856973..1858124 (+) 1152 WP_201681137.1 methionine aminotransferase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50641.17 Da        Isoelectric Point: 7.0183

>NTDB_id=527002 I6J02_RS07590 WP_201681134.1 1852017..1853402(+) (radA) [Sphingobacterium spiritivorum strain FDAARGOS_1145]
MAKSKSAYFCQNCGYESPKWLGQCPSCKQWNSFVEEVVEKGNSKVPEWRSTTSASVTKRANKAAIIHEIIYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSRADCYILTETSTQ
NIFKQIEAVQPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGAGLREVSNPSEIMISQRDAPVSGVSIAAMLEGMRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDMPIKTTFAFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGVFISKFNIKGLDPKKYNIAIRPMATLEDIFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=527002 I6J02_RS07590 WP_201681134.1 1852017..1853402(+) (radA) [Sphingobacterium spiritivorum strain FDAARGOS_1145]
ATGGCTAAAAGTAAATCAGCATATTTCTGTCAAAACTGCGGATATGAATCCCCGAAATGGTTAGGTCAATGTCCCTCATG
TAAACAATGGAATTCATTTGTAGAGGAAGTCGTCGAGAAAGGTAACTCCAAGGTTCCTGAATGGCGAAGTACAACCAGTG
CTTCCGTAACTAAGAGAGCGAATAAGGCCGCAATCATACACGAAATTATTTATCAGGATGAGTCACGCATTCTGACTCCT
GATCAGGAATTCAACAGGGTTCTTGGAGGCGGGATTGTACCCGGATCATTAGTCCTGATAGGAGGGGAGCCCGGTATAGG
TAAATCTACACTGATGCTGCAGCTTGCACTCTCTATTCCTCAGGTCAAAACGCTTTACATTTCGGGTGAAGAGAGTGAAC
AGCAGATCAAAATGCGGGCAGAACGCCTTTCGCAATCTTCCAGAGCTGATTGTTATATTCTTACGGAGACATCCACACAA
AATATATTTAAACAGATAGAAGCTGTACAACCCAATGTTATCGTAATAGATTCTATTCAAACGCTACATTCTTCTCAGAT
TGAATCTGCTCCGGGATCTGTATCTCAGGTCAGAGAGTGTACAGCTGAGCTTCTTCGGTTTGCAAAGGAGACCAGTACGC
CGGTATTTATTGTCGGTCATATCACTAAAGACGGCTCTATTGCCGGGCCAAAGGTATTAGAGCATATGGTAGATACCGTT
CTGCAGTTTGAAGGAGATCGTCATCACGTATACCGAATTCTTCGGGCAGTAAAAAACAGATTTGGCTCTGCTTCCGAACT
GGGTATCTATGAAATGCAGGGAGCTGGTCTGAGAGAAGTTTCCAATCCGTCTGAGATTATGATTTCTCAGCGGGATGCAC
CCGTGAGTGGCGTTTCAATTGCTGCGATGCTTGAAGGGATGCGTCCTATGATGATAGAAGTACAGGCATTGGTCAGCAAT
TCAGCGTTTGGTAATGCACAACGATCCTCTACAGGTTACGATACCAAGCGATTAAATATGTTGCTTGCTGTGCTTGAAAA
GCGGTTTGGCTTTCGCCTGAGTGCACAGGATGTCTTCCTGAATATTGCAGGTGGTTTACGTGTAGAAGACCCCGCTATTG
ACCTGGCTGTGATTGTTGCTATTATTTCTTCGCAACAGGATATGCCGATAAAAACAACTTTTGCTTTCGCAGGAGAAGTA
GGGTTGTCCGGAGAGATACGGGCCGTAAACCGAATAGAACAACGTATTGCTGAAGCAGAAAAACTGGGTTTTGAAGGTGT
TTTTATATCCAAGTTCAATATAAAAGGTCTTGACCCTAAAAAGTATAATATCGCAATCCGTCCTATGGCAACATTGGAGG
ATATATTCAGAGCATTATTTGGTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.268

100

0.525
  radA Streptococcus mitis NCTC 12261

52.268

100

0.525
  radA Streptococcus pneumoniae Rx1

52.155

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.155

100

0.525
  radA Streptococcus pneumoniae D39

52.155

100

0.525
  radA Streptococcus pneumoniae R6

52.155

100

0.525
  radA Streptococcus mitis SK321

52.052

100

0.523