Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6J03_RS22270 Genome accession   NZ_CP068082
Coordinates   5189815..5190756 (+) Length   313 a.a.
NCBI ID   WP_003006731.1    Uniprot ID   C2FV23
Organism   Sphingobacterium spiritivorum strain FDAARGOS_1146     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5184815..5195756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J03_RS22250 (I6J03_22250) - 5185442..5186581 (+) 1140 WP_039989932.1 cytochrome-c peroxidase -
  I6J03_RS22255 (I6J03_22255) - 5186653..5187162 (+) 510 WP_003006719.1 RNA polymerase sigma factor -
  I6J03_RS22260 (I6J03_22260) - 5187522..5188634 (+) 1113 WP_236586210.1 alpha/beta hydrolase -
  I6J03_RS22265 (I6J03_22265) - 5188670..5189725 (+) 1056 WP_003006729.1 YncE family protein -
  I6J03_RS22270 (I6J03_22270) ceuB 5189815..5190756 (+) 942 WP_003006731.1 ABC transporter permease Machinery gene
  I6J03_RS22275 (I6J03_22275) - 5190753..5191703 (+) 951 WP_003006734.1 iron chelate uptake ABC transporter family permease subunit -
  I6J03_RS22280 (I6J03_22280) - 5191700..5192461 (+) 762 WP_003006738.1 ABC transporter ATP-binding protein -
  I6J03_RS22285 (I6J03_22285) - 5192510..5193442 (+) 933 WP_003006741.1 siderophore ABC transporter substrate-binding protein -
  I6J03_RS22290 (I6J03_22290) - 5193450..5194262 (+) 813 WP_003006743.1 siderophore-interacting protein -
  I6J03_RS22295 (I6J03_22295) - 5194553..5194843 (-) 291 WP_003006746.1 transcriptional repressor -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34426.62 Da        Isoelectric Point: 9.8017

>NTDB_id=526998 I6J03_RS22270 WP_003006731.1 5189815..5190756(+) (ceuB) [Sphingobacterium spiritivorum strain FDAARGOS_1146]
MRILFLIVLLLLAIVSLFTGVKEISLSEIFHLSEDQLLVFTISRIPRTAALILAGGGLSIVGFIMQQITQNKFVSPTTAG
SLEAAKMGILFSLLLIPQESLVYKMLFALCFTFAASMLFMAMVRRIRFRSTVFIPLIGILFGNILGAISTFFAYKHNIVQ
NVQGWLMGDFSAVLQGQYETIYIILPALLISYVYADRFTIAGMGESFSKNLGLPHLTVVNLGLFVVSVTVSVTIVTVGAI
PFLGLIIPNIVSMIYGDNLRKNLPYTALIGAIFLLVCDILGRVLIYPYEIPIGLMVGITGGIIFFLLILKRNR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=526998 I6J03_RS22270 WP_003006731.1 5189815..5190756(+) (ceuB) [Sphingobacterium spiritivorum strain FDAARGOS_1146]
ATGCGCATTCTGTTTCTTATAGTTCTTCTACTCCTGGCTATTGTTTCTCTTTTTACAGGAGTCAAAGAGATTTCTCTTTC
TGAGATCTTCCATCTGTCGGAAGATCAGCTGCTGGTCTTTACGATCAGCAGAATACCACGTACAGCGGCACTGATACTGG
CCGGAGGAGGTCTCAGTATTGTCGGATTTATTATGCAGCAGATTACACAAAACAAATTTGTGTCACCAACTACGGCAGGT
TCTCTGGAAGCTGCAAAAATGGGTATCCTTTTCAGTTTACTACTCATCCCACAGGAATCACTGGTGTATAAAATGCTCTT
TGCTTTGTGCTTTACCTTTGCTGCAAGTATGCTGTTCATGGCTATGGTAAGGCGTATTCGCTTCCGGAGTACGGTATTCA
TTCCGCTGATTGGTATTCTATTCGGAAATATTCTGGGAGCAATCTCTACATTTTTTGCCTATAAGCACAATATTGTCCAA
AATGTACAGGGATGGTTGATGGGCGATTTTTCCGCAGTTCTTCAGGGACAATATGAAACTATCTACATTATTTTGCCTGC
CTTGTTGATCAGTTATGTCTATGCAGACCGCTTTACTATTGCAGGAATGGGTGAGAGTTTTTCAAAAAACCTCGGACTCC
CCCATCTGACAGTTGTCAACCTGGGGTTATTTGTAGTTTCAGTTACTGTGAGTGTCACTATTGTCACCGTAGGTGCTATA
CCCTTTTTAGGGCTTATCATTCCTAATATTGTCAGTATGATATATGGCGACAATCTCCGCAAAAATCTGCCTTATACGGC
ATTGATAGGTGCTATTTTTCTTTTAGTATGCGATATACTGGGCAGAGTTCTTATATATCCCTACGAAATCCCCATCGGAC
TGATGGTCGGAATTACTGGGGGAATTATCTTCTTTTTACTGATCCTAAAACGCAACAGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C2FV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.508

97.444

0.482