Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J03_RS08290 Genome accession   NZ_CP068082
Coordinates   1980807..1982192 (-) Length   461 a.a.
NCBI ID   WP_003009262.1    Uniprot ID   C2G186
Organism   Sphingobacterium spiritivorum strain FDAARGOS_1146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1975807..1987192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J03_RS08275 (I6J03_08275) - 1976067..1977218 (-) 1152 WP_003009255.1 methionine aminotransferase -
  I6J03_RS08280 (I6J03_08280) - 1977293..1979782 (-) 2490 WP_003009258.1 DUF5686 and carboxypeptidase regulatory-like domain-containing protein -
  I6J03_RS08285 (I6J03_08285) - 1979977..1980669 (+) 693 WP_003009260.1 TlpA disulfide reductase family protein -
  I6J03_RS08290 (I6J03_08290) radA 1980807..1982192 (-) 1386 WP_003009262.1 DNA repair protein RadA Machinery gene
  I6J03_RS08295 (I6J03_08295) - 1982448..1982738 (-) 291 WP_003009263.1 helix-turn-helix domain-containing protein -
  I6J03_RS08300 (I6J03_08300) - 1982911..1983060 (+) 150 WP_003009266.1 hypothetical protein -
  I6J03_RS08305 (I6J03_08305) - 1983067..1983729 (-) 663 WP_003009267.1 rhomboid family intramembrane serine protease -
  I6J03_RS08310 (I6J03_08310) - 1983937..1986099 (+) 2163 WP_003009269.1 peptidase domain-containing ABC transporter -
  I6J03_RS08315 (I6J03_08315) - 1986305..1987174 (+) 870 WP_003009271.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50582.14 Da        Isoelectric Point: 7.0182

>NTDB_id=526995 I6J03_RS08290 WP_003009262.1 1980807..1982192(-) (radA) [Sphingobacterium spiritivorum strain FDAARGOS_1146]
MAKSKSAYFCQNCGYESPKWLGQCPSCKQWNSFVEEVVEKGNSKVPEWRSTTTASVSKRANKAAIIHEIVYQDESRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIEAVQPDVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDAPVSGVSIAAMLEGMRPMMIEVQALVSN
SAFGTAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIVAIISSQQDMPIKTTIAFAGEV
GLSGEIRAVNRIEQRIAEAEKLGFEGIFISKFNIKGLDPKKYNIAIRPMATLEDIFRALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=526995 I6J03_RS08290 WP_003009262.1 1980807..1982192(-) (radA) [Sphingobacterium spiritivorum strain FDAARGOS_1146]
ATGGCTAAAAGTAAATCAGCATATTTCTGTCAAAACTGTGGGTATGAATCCCCGAAATGGTTAGGTCAATGTCCGTCCTG
TAAACAATGGAACTCATTTGTAGAAGAAGTGGTCGAAAAGGGTAATTCCAAAGTGCCCGAATGGCGGAGTACGACCACGG
CTTCTGTATCCAAACGGGCGAATAAAGCTGCAATTATACACGAAATTGTTTATCAGGATGAGTCCCGGATATTGACCCCT
GATCAGGAGTTCAACAGAGTACTGGGTGGAGGAATCGTACCCGGATCATTAGTGCTGATAGGAGGAGAGCCGGGTATAGG
AAAATCTACATTGATGTTGCAGCTGGCACTTTCCATTCCTCAGGTGAAAACCCTTTATATTTCGGGTGAGGAGAGTGAAC
AGCAGATCAAAATGCGGGCAGAGCGCCTTTCCCAGTCTTCAAAGGCCAATTGTTATATACTGACAGAGACATCTACACAA
AATATATTTAAACAGATAGAAGCTGTACAGCCGGATGTTATTGTGATAGATTCCATTCAGACCTTACATTCTTCACAGAT
TGAATCTGCTCCGGGATCTGTATCTCAGGTAAGAGAATGTACGGCTGAACTTCTTCGGTTTGCAAAAGAGACCAGTACTC
CTGTATTTATCGTCGGTCATATCACTAAAGACGGATCTATTGCAGGCCCAAAGGTATTGGAGCATATGGTTGATACTGTT
CTGCAGTTTGAAGGAGATCGTCATCATGTCTACAGAATTCTTCGGGCGGTAAAGAATCGGTTCGGATCTGCATCTGAACT
TGGTATCTATGAGATGCAGGGTTCGGGTTTGAGAGAAGTTTCTAACCCGTCTGAGATTATGATTTCTCAGCGGGATGCAC
CTGTGAGCGGTGTTTCTATTGCTGCGATGCTTGAAGGGATGCGCCCGATGATGATAGAGGTGCAGGCTTTGGTGAGCAAT
TCGGCATTCGGTACCGCACAGCGATCTTCTACAGGATACGATACGAAGCGGTTAAATATGCTGCTGGCTGTTCTTGAAAA
ACGCTTTGGCTTTCGTCTGAGTGCACAGGATGTCTTCCTGAATATTGCCGGCGGTTTACGTGTAGAAGATCCCGCTATCG
ATCTTGCTGTGATTGTTGCGATTATCTCTTCACAACAGGATATGCCGATAAAAACAACGATTGCTTTTGCCGGAGAAGTA
GGACTGTCCGGAGAAATACGGGCAGTAAACCGAATTGAGCAACGCATAGCTGAAGCAGAAAAACTGGGTTTTGAAGGAAT
TTTTATATCCAAATTCAATATAAAAGGTCTTGACCCGAAAAAGTATAATATTGCAATCCGGCCTATGGCCACATTAGAGG
ATATTTTCCGGGCCTTATTTGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

AAA domain (AAA_25)

(71-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C2G186

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

52.268

100

0.525
  radA Streptococcus pneumoniae Rx1

52.155

100

0.525
  radA Streptococcus pneumoniae R6

52.155

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.155

100

0.525
  radA Streptococcus pneumoniae D39

52.155

100

0.525
  radA Streptococcus mitis SK321

52.052

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

52.052

100

0.523