Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6J04_RS12530 Genome accession   NZ_CP068079
Coordinates   2533720..2534145 (+) Length   141 a.a.
NCBI ID   WP_235318543.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain FDAARGOS_1147     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528720..2539145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J04_RS12500 (I6J04_12500) - 2529511..2530053 (+) 543 WP_046099267.1 5-formyltetrahydrofolate cyclo-ligase -
  I6J04_RS12505 (I6J04_12505) - 2530070..2531530 (+) 1461 WP_046099268.1 rhomboid family protein -
  I6J04_RS12510 (I6J04_12510) - 2531511..2531711 (+) 201 WP_015900419.1 YqgQ family protein -
  I6J04_RS12515 (I6J04_12515) - 2531711..2532697 (+) 987 WP_103211985.1 ROK family glucokinase -
  I6J04_RS12520 (I6J04_12520) - 2532697..2533026 (+) 330 WP_015900417.1 MTH1187 family thiamine-binding protein -
  I6J04_RS12525 (I6J04_12525) - 2533026..2533649 (+) 624 WP_015900416.1 MBL fold metallo-hydrolase -
  I6J04_RS12530 (I6J04_12530) comGA 2533720..2534145 (+) 426 WP_235318543.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  I6J04_RS13700 (I6J04_12535) - 2534610..2534984 (+) 375 WP_200894317.1 helix-turn-helix transcriptional regulator -
  I6J04_RS12540 (I6J04_12540) - 2534954..2535775 (+) 822 WP_200894318.1 DNA adenine methylase -
  I6J04_RS12545 (I6J04_12545) - 2535727..2536713 (+) 987 WP_200894319.1 DNA adenine methylase -
  I6J04_RS12550 (I6J04_12550) - 2536719..2538674 (+) 1956 WP_046099270.1 AlwI family type II restriction endonuclease -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16402.09 Da        Isoelectric Point: 8.7804

>NTDB_id=526988 I6J04_RS12530 WP_235318543.1 2533720..2534145(+) (comGA) [Staphylococcus carnosus strain FDAARGOS_1147]
MKRLLDTILTDAISKNVSDIHFIPIEKEVIIKFRIHDDLINYDNIEILTYLKLLTFMKFQAVLDVSNYHQAQSGQTTFKH
QKLYNLRVSTLPLSLGIESCVIRLSPQYFYQDTDRDGPKHFYHLMNKKQGLILFTGPTGVL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=526988 I6J04_RS12530 WP_235318543.1 2533720..2534145(+) (comGA) [Staphylococcus carnosus strain FDAARGOS_1147]
ATGAAAAGACTTTTAGATACAATTCTCACAGATGCAATTTCGAAAAATGTATCTGATATCCATTTTATTCCAATTGAAAA
AGAAGTTATAATCAAGTTCAGAATTCACGATGATTTAATTAATTATGACAATATCGAAATTCTGACTTATTTAAAGTTAC
TTACGTTTATGAAATTTCAAGCAGTGCTCGATGTATCTAATTATCATCAAGCACAAAGTGGTCAGACAACTTTCAAGCAT
CAAAAACTATATAATTTACGTGTTTCTACTTTACCGTTATCCTTAGGGATTGAGAGTTGTGTAATACGACTTTCACCCCA
GTATTTTTATCAAGATACCGATCGTGATGGTCCTAAACACTTCTATCATTTAATGAATAAAAAGCAAGGACTTATTTTAT
TCACGGGACCAACCGGGGTATTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

56.115

98.582

0.553
  comGA Staphylococcus aureus N315

56.115

98.582

0.553
  pilB Glaesserella parasuis strain SC1401

36.735

100

0.383