Detailed information NTG0052694

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA1S_RS07285
• Genome accession: NC_022808
• Coordinates: 1532408..1533412 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa PA1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1527408..1538412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA1S_RS07255 (PA1S_07270)	fghA	1527500..1528351 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PA1S_RS07260 (PA1S_07275)	ispF	1528422..1528895 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA1S_RS07265 (PA1S_07280)	truD	1528892..1529959 (+)	1068	WP_023517893.1	tRNA pseudouridine(13) synthase TruD	-
PA1S_RS07270 (PA1S_07285)	surE	1529947..1530696 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA1S_RS07275 (PA1S_07290)	-	1530729..1531364 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA1S_RS07280 (PA1S_07295)	-	1531410..1532303 (+)	894	WP_031639387.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA1S_RS07285 (PA1S_07300)	rpoS	1532408..1533412 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA1S_RS07290 (PA1S_07305)	fdxA	1533839..1534162 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PA1S_RS07295 (PA1S_07310)	mutS	1534229..1536796 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PA1S_RS07300 (PA1S_07315)	-	1536922..1537929 (-)	1008	WP_023517892.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=52694 PA1S_RS07285 WP_003113871.1 1532408..1533412(+) (rpoS) [Pseudomonas aeruginosa PA1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=52694 PA1S_RS07285 WP_003113871.1 1532408..1533412(+) (rpoS) [Pseudomonas aeruginosa PA1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653