Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J07_RS09630 Genome accession   NZ_CP068063
Coordinates   1902682..1904058 (-) Length   458 a.a.
NCBI ID   WP_002508585.1    Uniprot ID   A0A1E5THJ8
Organism   Staphylococcus equorum strain FDAARGOS_1150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897682..1909058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J07_RS09615 (I6J07_09630) cysE 1898656..1899267 (-) 612 WP_230456586.1 serine O-acetyltransferase -
  I6J07_RS09620 (I6J07_09635) gltX 1899644..1901101 (-) 1458 WP_103170068.1 glutamate--tRNA ligase -
  I6J07_RS09625 (I6J07_09640) - 1901550..1902608 (-) 1059 WP_103170067.1 PIN/TRAM domain-containing protein -
  I6J07_RS09630 (I6J07_09645) radA 1902682..1904058 (-) 1377 WP_002508585.1 DNA repair protein RadA Machinery gene
  I6J07_RS09635 (I6J07_09650) - 1904403..1906865 (-) 2463 WP_002508586.1 ATP-dependent Clp protease ATP-binding subunit -
  I6J07_RS09640 (I6J07_09655) - 1906877..1907887 (-) 1011 WP_169926917.1 protein arginine kinase -
  I6J07_RS09645 (I6J07_09660) - 1907880..1908431 (-) 552 WP_103170065.1 UvrB/UvrC motif-containing protein -
  I6J07_RS09650 (I6J07_09665) - 1908448..1908909 (-) 462 WP_002508589.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50617.15 Da        Isoelectric Point: 7.2148

>NTDB_id=526885 I6J07_RS09630 WP_002508585.1 1902682..1904058(-) (radA) [Staphylococcus equorum strain FDAARGOS_1150]
MAKKKVVFECMACGYQSAKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDRDNVSKVQKLNEIKQETTPRVKTKSDEF
NRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLNQTKLRAERLDEDSSELNVFAETDLEVIHE
TVKQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFE
GDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFN
NPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTG
EVRRVSRIEQRVQEAEKLGFKRIIIPESNIGGWQFPSDIKVIGVKSVHEALKYALTKQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=526885 I6J07_RS09630 WP_002508585.1 1902682..1904058(-) (radA) [Staphylococcus equorum strain FDAARGOS_1150]
GTGGCCAAGAAGAAAGTTGTTTTTGAATGTATGGCATGTGGTTATCAGTCCGCAAAATGGATGGGCAAATGTCCAAATTG
TGGTGGCTGGAACCAAATGGAAGAAATTGTTGAGCAAAAGGCGGCAAGTCCAAAACATGGCGTGCGCAGTCGTGATCGCG
ACAACGTTTCAAAAGTACAGAAGTTAAATGAAATTAAACAAGAAACGACACCACGTGTTAAAACCAAGTCAGACGAATTT
AATCGTGTGCTCGGCGGAGGTATTGTTAATGGTTCGCTCGTATTGATTGGTGGAGATCCTGGTATAGGGAAATCAACATT
ACTATTACAAATATGTGCGGCACTATCACAATCGCATAACGTCTTATACATAACAGGTGAGGAATCATTAAATCAAACTA
AGCTAAGAGCTGAAAGATTGGATGAAGATTCAAGCGAACTTAATGTATTTGCAGAAACTGATTTAGAAGTCATTCACGAA
ACAGTAAAACAATTAAAACCGGATTTACTTGTAGTTGACTCAATCCAAACGATATTCCATCCGGAAATTAGTTCAGCACC
AGGCTCAGTGTCTCAAGTAAGAGAAAGTACTCAAAGCTTAATGAACATTGCTAAACAAATGAATATTGCAACATTTATTG
TGGGACATGTAACAAAAGAAGGTCAAATTGCTGGTCCACGCTTATTAGAACACATGGTAGATACAGTACTTTATTTCGAA
GGTGACGAACACCATGCATATCGTATTTTGAGAGCGGTGAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATTTTTGA
AATGAAACAAAGCGGATTGAAAGGTGTTAAAAACCCATCCGAGATGTTTTTAGAAGAACGTTCGACAAATGTGCCCGGCT
CGACTATTGTCTCTACAATGGAAGGCACGAGACCCTTACTCATAGAAGTTCAGGCCCTTGTTACCCCAACGACTTTTAAT
AATCCTAGACGGATGGCAACAGGTATTGATCACAACCGTTTGAGTCTGTTGATGGCAGTCTTGGAGAAAAAAGAAAATTA
TTTACTACAACAACAAGATGCGTATATTAAAGTTGCAGGTGGTGTAAGATTAACAGAACCTGCTGTTGATTTAGGTATCA
TTGTGGCAACTGCTTCAAGCTTTAAAGATCTAACAGTAGATGGTTTAGATTGCTTTATAGGAGAAGTTGGACTGACTGGA
GAAGTGAGACGCGTATCTCGTATAGAGCAACGTGTACAGGAAGCAGAGAAACTCGGATTTAAACGTATTATTATTCCAGA
ATCCAATATTGGCGGATGGCAATTCCCTAGTGATATTAAGGTCATTGGCGTGAAAAGTGTTCACGAAGCCTTAAAATACG
CTTTGACAAAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5THJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

99.563

0.646
  radA Streptococcus pneumoniae Rx1

59.292

98.69

0.585
  radA Streptococcus pneumoniae D39

59.292

98.69

0.585
  radA Streptococcus pneumoniae R6

59.292

98.69

0.585
  radA Streptococcus pneumoniae TIGR4

59.292

98.69

0.585
  radA Streptococcus mitis SK321

59.292

98.69

0.585
  radA Streptococcus mitis NCTC 12261

59.292

98.69

0.585