Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J10_RS11840 Genome accession   NZ_CP068061
Coordinates   2390804..2392174 (+) Length   456 a.a.
NCBI ID   WP_103322210.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2385804..2397174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J10_RS11820 (I6J10_11825) - 2386150..2386611 (+) 462 WP_016911178.1 CtsR family transcriptional regulator -
  I6J10_RS11825 (I6J10_11830) - 2386626..2387162 (+) 537 WP_016911177.1 UvrB/UvrC motif-containing protein -
  I6J10_RS11830 (I6J10_11835) - 2387163..2388167 (+) 1005 WP_016911176.1 protein arginine kinase -
  I6J10_RS11835 (I6J10_11840) - 2388186..2390648 (+) 2463 WP_107536380.1 ATP-dependent Clp protease ATP-binding subunit -
  I6J10_RS11840 (I6J10_11845) radA 2390804..2392174 (+) 1371 WP_103322210.1 DNA repair protein RadA Machinery gene
  I6J10_RS11845 (I6J10_11850) - 2392197..2393255 (+) 1059 WP_016911173.1 PIN/TRAM domain-containing protein -
  I6J10_RS11850 (I6J10_11855) ispD 2393302..2393943 (+) 642 WP_233709596.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I6J10_RS11855 (I6J10_11860) ispF 2393936..2394415 (+) 480 WP_016911171.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I6J10_RS11860 (I6J10_11865) gltX 2394431..2395885 (+) 1455 WP_016911170.1 glutamate--tRNA ligase -
  I6J10_RS11865 (I6J10_11870) cysE 2396141..2396782 (+) 642 WP_016911169.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50460.20 Da        Isoelectric Point: 7.6943

>NTDB_id=526860 I6J10_RS11840 WP_103322210.1 2390804..2392174(+) (radA) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
MAKKKVVFECLACGFQSPKWMGKCSNCGAWNQMEESIEQKETKGPKNTFKSDVPVQKIEKLKDIKEEDTPRIKTKINEFN
RVLGGGVVQGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVKQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVYHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVTNPSEMFLEERTKHVSGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIIIAIASSFQDKPTKGDDCYVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPEGTEVIGVSTTREALKLAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=526860 I6J10_RS11840 WP_103322210.1 2390804..2392174(+) (radA) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
ATGGCAAAAAAGAAAGTAGTATTTGAATGTTTAGCCTGCGGATTTCAATCTCCTAAATGGATGGGTAAATGCTCGAATTG
TGGTGCGTGGAATCAAATGGAAGAATCTATTGAACAAAAAGAAACTAAAGGACCTAAAAACACATTTAAGTCAGATGTTC
CAGTTCAAAAAATAGAAAAATTAAAAGATATTAAAGAAGAAGATACACCTAGAATAAAAACTAAAATCAATGAATTTAAC
CGTGTCTTAGGTGGGGGAGTCGTACAAGGTTCACTTGTATTAATAGGTGGAGACCCCGGAATTGGGAAATCTACATTACT
ATTACAAATATGTGCGGCACTATCCCAACAAAAGAATGTGTTATATGTATCAGGTGAAGAATCGGTAAAACAAACTAAAC
TAAGAGCAGAGCGTTTAGTTGAAGATTCTGGAGAATTAAATGTATATGCAGAAACGAATTTAGAGATTATACACAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTTATCGATTCTATTCAAACTGTTTATCATCCAGAAGTTACATCTGCGCCAGG
TTCAGTTTCTCAAGTGAGAGAATGTACACAAAATTTAATGCACATAGCTAAGCAAATGAATATAGCTACATTCATCGTTG
GACATGTAACGAAAGATGGACAAATAGCTGGTCCAAGATTATTAGAACATATGGTAGATACCGTTTTATACTTTGAAGGT
GATACACATCATGCTTATCGTATATTGAGAGCAGTTAAAAACCGTTTTGGTTCAACTAATGAAATGGGTATTTTTGAAAT
GAAACAAACTGGGCTTAATGAAGTAACGAACCCTTCAGAAATGTTTCTCGAAGAAAGAACGAAACATGTGTCTGGTTCGA
CCATTGTTGCGACGATGGAAGGGACAAGACCTATATTAGTTGAAGTCCAAGCACTTGTAACACCTACAACATTCCATAAC
CCACGAAGAATGGCTACAGGTATAGATCATAATAGATTAAGCTTGTTAATGGCCGTACTAGAGAAAAAAGAAAACTTCTT
ATTACAACAGCAAGATGCATATATTAAAATTGCTGGTGGTGTTAAATTGAGCGAGCCTGCTGTAGACTTAAGCATTATCA
TAGCGATAGCTTCAAGTTTCCAAGATAAACCAACTAAAGGTGATGATTGCTACGTTGGTGAAGTTGGTTTGACGGGTGAA
GTAAGAAGGGTAGCAAGAATTGATCAAAGGGTCCAAGAAGCTGCTAAACTCGGATTTAAGCGTATTATTATACCTAAAAA
TAATATTAAAGGTTTAGAATTTCCAGAAGGCACTGAAGTGATTGGTGTATCAACGACAAGAGAAGCATTGAAACTTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.721

100

0.66
  radA Streptococcus pneumoniae Rx1

61.013

99.561

0.607
  radA Streptococcus pneumoniae D39

61.013

99.561

0.607
  radA Streptococcus pneumoniae R6

61.013

99.561

0.607
  radA Streptococcus pneumoniae TIGR4

61.013

99.561

0.607
  radA Streptococcus mitis NCTC 12261

61.013

99.561

0.607
  radA Streptococcus mitis SK321

61.013

99.561

0.607