Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6J10_RS01045 Genome accession   NZ_CP068061
Coordinates   218780..219751 (+) Length   323 a.a.
NCBI ID   WP_107536548.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1153     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 213780..224751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J10_RS01025 (I6J10_01025) nrdI 214551..214949 (+) 399 WP_016911809.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  I6J10_RS01030 (I6J10_01030) nrdE 214912..217017 (+) 2106 WP_107536549.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  I6J10_RS01035 (I6J10_01035) nrdF 217045..218016 (+) 972 WP_016911807.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  I6J10_RS01040 (I6J10_01040) - 218237..218653 (+) 417 WP_016911806.1 FixH family protein -
  I6J10_RS01045 (I6J10_01045) ceuB 218780..219751 (+) 972 WP_107536548.1 ABC transporter permease Machinery gene
  I6J10_RS01050 (I6J10_01050) - 219741..220706 (+) 966 WP_107536547.1 iron chelate uptake ABC transporter family permease subunit -
  I6J10_RS01055 (I6J10_01055) - 220703..221503 (+) 801 WP_016911803.1 ABC transporter ATP-binding protein -
  I6J10_RS01060 (I6J10_01060) - 221609..222649 (+) 1041 WP_107536546.1 siderophore ABC transporter substrate-binding protein -
  I6J10_RS01065 (I6J10_01065) murB 222909..223829 (-) 921 WP_016911801.1 UDP-N-acetylmuramate dehydrogenase -
  I6J10_RS01070 (I6J10_01070) - 223900..224421 (-) 522 WP_016911800.1 GrpB family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35456.93 Da        Isoelectric Point: 10.5946

>NTDB_id=526830 I6J10_RS01045 WP_107536548.1 218780..219751(+) (ceuB) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
MGKFLMRLDVLVVLLVIATFFSIFIGVSEVKPLHIFNLSDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILVKLLFATLLSLLGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISMFRGDHLKNALPHTAIFGALFVMICDVLGRLIIFPYEITIGLTIGVIGSFIFIVMLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=526830 I6J10_RS01045 WP_107536548.1 218780..219751(+) (ceuB) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAGTAGTATTATTAGTAATCGCAACATTTTTCTCGATTTTTATAGGTGT
CTCTGAGGTAAAACCTTTACATATATTTAATCTATCTGATGAACAAAAAAATATATTAGTATCGAGTAGGATTCCAAGAA
CAGTAAGTATTATTATTTCGGGTAGCTCTTTAGCAATTTGTGGGCTTATTATGCAACAGCTCACACGTAATAAATTTGTT
TCACCAACAACGGCTGGAACAATGGACTGGGCTAGATTAGGTATTTTAATTTCATTAATTGCTTTTCCAGAGGCAAATAT
ATTAGTTAAATTACTATTTGCTACATTGTTGAGTTTGTTAGGAACAATGTTATTCATGCAAATTCTGCAAAGAATTCAAT
TCAAAGATGTCATATTCATTCCACTAGTTGGTATTATGCTCGGAAATATCGTTTCTAGTTTTTCATCTTTTGTTGCTTTA
AGAACGAATGCTGTGCAAAGTATAGGGAATTTCATGCAAGGTAATTTTTCGATTATTACAAGCGGTAGATATGAAATTTT
ATATATAAGTATTCCGTTATTGATTCTTGCATTTATATTTGCAAATCAATTTACGATTGCTGGAATGGGTAAAGATTTTA
GTGTGAACTTAGGACTTAATTATCAAAAAGTCGTAAATATCGGGCTGATTATCGCATCAATTATTACCGCGCTCGTTGTT
GTAACAGTTGGAATGATGCCTTTCTTAGGATTGATTATTCCAAACTTAATATCAATGTTTAGAGGTGATCATTTAAAAAA
TGCACTTCCACATACAGCTATTTTCGGCGCATTGTTTGTTATGATTTGTGATGTATTAGGTAGACTCATCATTTTCCCTT
ATGAAATTACAATTGGATTAACGATTGGTGTAATTGGTAGTTTTATTTTTATAGTAATGCTGATGAAAGGACGATCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.527

98.142

0.486