Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   I6J14_RS00480 Genome accession   NZ_CP068057
Coordinates   89827..90864 (+) Length   345 a.a.
NCBI ID   WP_115253017.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 84827..95864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS00455 (I6J14_00455) - 84966..86297 (+) 1332 WP_115253019.1 dipeptidase -
  I6J14_RS00460 (I6J14_00460) arcC 86317..87267 (+) 951 WP_003051912.1 carbamate kinase -
  I6J14_RS00465 (I6J14_00465) asnA 87593..88585 (+) 993 WP_003051908.1 aspartate--ammonia ligase -
  I6J14_RS00470 (I6J14_00470) rsmD 88820..89359 (+) 540 WP_003051907.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6J14_RS00475 (I6J14_00475) coaD 89349..89840 (+) 492 WP_003051905.1 pantetheine-phosphate adenylyltransferase -
  I6J14_RS00480 (I6J14_00480) sepM 89827..90864 (+) 1038 WP_115253017.1 SepM family pheromone-processing serine protease Regulator
  I6J14_RS00485 (I6J14_00485) - 91145..92128 (+) 984 WP_003051900.1 LacI family DNA-binding transcriptional regulator -
  I6J14_RS00490 (I6J14_00490) rbsK 92121..93032 (+) 912 WP_115253016.1 ribokinase -
  I6J14_RS00495 (I6J14_00495) rbsD 93007..93405 (+) 399 WP_003051896.1 D-ribose pyranase -
  I6J14_RS00500 (I6J14_00500) - 93421..94899 (+) 1479 WP_115253015.1 sugar ABC transporter ATP-binding protein -
  I6J14_RS00505 (I6J14_00505) rbsC 94901..95842 (+) 942 WP_037584987.1 ribose ABC transporter permease -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37548.10 Da        Isoelectric Point: 9.5393

>NTDB_id=526705 I6J14_RS00480 WP_115253017.1 89827..90864(+) (sepM) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKTIKKIKWWLISLIALVALLIVLFFPLPYYVEMPGGAYDIRSVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSESKSETGRIIKLKNGKNGIGIALTDHTKVNSADKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKNGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVEKAVKKANPKAISNYEEAKRA
AKQLKTKMKIVPVTTVQDALAYLRQ

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=526705 I6J14_RS00480 WP_115253017.1 89827..90864(+) (sepM) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAGCCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTCTTTTTCCC
TCTTCCTTACTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGATCTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAATTGCTCTATGCTTGGCTAACCCCT
TTTACTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTCT
ATGTGTTAGATGTTAGCAAGGATTCAACCTTTAAAGGTGCTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAATAGCGAATCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGACAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGTGCAGGCTTAATGTTT
ACACTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AAATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAGATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGAAAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.884

100

0.719