Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6J15_RS03930 Genome accession   NZ_CP068056
Coordinates   754522..755883 (+) Length   453 a.a.
NCBI ID   WP_111713020.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749522..760883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS03900 (I6J15_03900) - 749792..750319 (+) 528 WP_111713022.1 5-formyltetrahydrofolate cyclo-ligase -
  I6J15_RS03905 (I6J15_03905) - 750316..750987 (+) 672 WP_020917539.1 rhomboid family intramembrane serine protease -
  I6J15_RS03910 (I6J15_03910) galU 751049..751969 (-) 921 WP_373104342.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I6J15_RS03915 (I6J15_03915) - 752030..753046 (-) 1017 WP_111713021.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  I6J15_RS03920 (I6J15_03920) - 753246..754013 (+) 768 WP_058814289.1 epoxyqueuosine reductase QueH -
  I6J15_RS03925 (I6J15_03925) - 754040..754486 (+) 447 WP_020917535.1 dUTP diphosphatase -
  I6J15_RS03930 (I6J15_03930) radA 754522..755883 (+) 1362 WP_111713020.1 DNA repair protein RadA Machinery gene
  I6J15_RS03935 (I6J15_03935) - 755999..756496 (+) 498 WP_020917533.1 beta-class carbonic anhydrase -
  I6J15_RS03940 (I6J15_03940) - 756523..757449 (+) 927 WP_111713019.1 aldo/keto reductase -
  I6J15_RS03945 (I6J15_03945) - 757488..757985 (+) 498 WP_058832849.1 LURP-one-related/scramblase family protein -
  I6J15_RS03950 (I6J15_03950) gltX 758108..759565 (+) 1458 WP_111713018.1 glutamate--tRNA ligase -
  I6J15_RS03955 (I6J15_03955) - 759671..760837 (+) 1167 WP_111713017.1 MFS transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49552.84 Da        Isoelectric Point: 5.8259

>NTDB_id=526678 I6J15_RS03930 WP_111713020.1 754522..755883(+) (radA) [Streptococcus lutetiensis strain FDAARGOS_1158]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESSEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTSELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYSPKNSLAGIDIPETIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=526678 I6J15_RS03930 WP_111713020.1 754522..755883(+) (radA) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATCGCTAAGAAGAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAGTATTTAGGGCGTTGCCCAAACTG
TTCGTCATGGACGTCATTTGTTGAAGAAGTTGAGGTGCAAGAGGTTAAAAATGCGCGTGTCAGCTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTAAAAGATGTGAGCTCGATTAACTACTCACGCACGAAGACAGACATGGATGAATTTAACCGTGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACCCTGCTTTTGCA
AGTATCGATTCAGCTTGCTGACAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCATCTGAGCAGATTAAACTACGTA
GTGAACGTCTTGGCGATATTGACAATGAATTTTACCTTTATGCTGAGACTAATATGCAAGCCATTCGTGCGCAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAAACCATTATGAGCCCTGACATTTCTGGGGTTCAAGGGTCAGT
ATCACAAGTGCGTGAAGTGACATCGGAGCTCATGCAACTAGCTAAGACTAATAATATTGCAACCTTTATCGTTGGTCATG
TGACTAAGGAGGGGCAGCTTGCTGGGCCGCGTATGCTTGAGCATATGGTGGATACAGTACTCTATTTTGAAGGGGAACGT
CACCATACTTTCCGTATTTTGCGTGCCGTGAAAAATCGTTTTGGCTCAACCAACGAAATTGGCATTTTTGAAATGCAATC
AGGCGGGCTTGTTGAAGTACTTAATCCTAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCGACTGGCTCAGCTATCG
TGGTTACTATGGAAGGAAGTCGTCCAATTTTAGCAGAAGTCCAAGCTTTGGTAACACCAACGGTTTTTGGAAATGCCAAA
CGCACAACGACAGGTCTTGATTTTAACCGAGTCAGCTTGATTATGGCGGTGCTTGAAAAACGTTGTGGGCTTTTGTTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTGAAACTTGATGAACCAGCCATTGACTTGGCAGTTGCGGTAGCGA
TTGCGTCAAGCTATAAAGAGAAGCCAACCAATCCCCAAGAAGCTTTTATTGGTGAAATTGGTTTGACGGGTGAGATTCGT
CGTGTCACTCGTATTGAACAACGTATCAATGAAGCGGCAAAACTTGGCTTTACCAAAGTTTACTCGCCAAAGAATTCTTT
GGCTGGTATTGATATTCCAGAAACGATTGAAGTGGTTGGGGTAACAACCGTCGGTGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.053

99.779

0.879
  radA Streptococcus pneumoniae D39

88.053

99.779

0.879
  radA Streptococcus pneumoniae R6

88.053

99.779

0.879
  radA Streptococcus pneumoniae TIGR4

88.053

99.779

0.879
  radA Streptococcus mitis SK321

88.053

99.779

0.879
  radA Streptococcus mitis NCTC 12261

87.832

99.779

0.876
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

100

0.618