Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   I6J17_RS12905 Genome accession   NZ_CP068054
Coordinates   2652524..2653318 (+) Length   264 a.a.
NCBI ID   WP_029141644.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2647524..2658318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS12875 (I6J17_12875) trpCF 2648276..2649700 (+) 1425 WP_029141647.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -
  I6J17_RS12880 (I6J17_12880) trpB 2649678..2650883 (+) 1206 WP_029141646.1 tryptophan synthase subunit beta -
  I6J17_RS12885 (I6J17_12885) - 2650876..2651019 (+) 144 WP_019721536.1 hypothetical protein -
  I6J17_RS12890 (I6J17_12890) trpA 2651012..2651803 (+) 792 WP_029141645.1 tryptophan synthase subunit alpha -
  I6J17_RS12895 (I6J17_12895) - 2652051..2652233 (-) 183 WP_017552868.1 YfhD family protein -
  I6J17_RS12900 (I6J17_12900) - 2652314..2652436 (-) 123 WP_073193833.1 YfhE family protein -
  I6J17_RS12905 (I6J17_12905) recX 2652524..2653318 (+) 795 WP_029141644.1 recombination regulator RecX Regulator
  I6J17_RS12910 (I6J17_12910) - 2653321..2653638 (+) 318 WP_029141643.1 YfhH family protein -
  I6J17_RS12915 (I6J17_12915) - 2653729..2653887 (-) 159 WP_029141642.1 small, acid-soluble spore protein K -
  I6J17_RS12920 (I6J17_12920) - 2653972..2654952 (-) 981 WP_029141641.1 metal-dependent hydrolase -
  I6J17_RS12925 (I6J17_12925) mutY 2655132..2656223 (+) 1092 WP_019721542.1 A/G-specific adenine glycosylase -
  I6J17_RS12930 (I6J17_12930) - 2656842..2658299 (-) 1458 WP_029141640.1 glutamate synthase subunit beta -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30864.60 Da        Isoelectric Point: 9.3837

>NTDB_id=526624 I6J17_RS12905 WP_029141644.1 2652524..2653318(+) (recX) [Heyndrickxia coagulans strain FDAARGOS_1160]
MPVITKISLQKNNKERYNIFLDGKYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIRFLSYRMRSEKEV
RDDLIKKEFAPEVVRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVINRELQQKGIAPEMIEKALEIFDADQQVEH
ARALAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEETEWKALLQHAEKAKRKYGKFSGYVYRQK
MKQFLYRKGFPMDLIERYLREEGD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=526624 I6J17_RS12905 WP_029141644.1 2652524..2653318(+) (recX) [Heyndrickxia coagulans strain FDAARGOS_1160]
GTGCCTGTCATTACAAAAATTTCGCTTCAAAAAAACAATAAAGAACGATACAATATTTTTCTTGACGGAAAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGGAAAGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCGTTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCGTCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACGCATAAAGGGCCTGTTGTCATTAACAGGG
AACTTCAGCAAAAAGGCATTGCACCAGAGATGATCGAAAAAGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAT
GCCCGTGCCCTTGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAGCAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAACGG
AATGGAAAGCACTTCTTCAGCATGCCGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATATGTATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGATGGATTTGATAGAGCGCTATTTGCGGGAAGAGGGGGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.672

99.242

0.523