Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   I6J17_RS05375 Genome accession   NZ_CP068054
Coordinates   1062970..1064355 (-) Length   461 a.a.
NCBI ID   WP_029142532.1    Uniprot ID   A0A8B4BTT6
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057970..1069355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS05345 (I6J17_05345) flgL 1058441..1059334 (-) 894 WP_029142537.1 flagellar hook-associated protein FlgL -
  I6J17_RS05350 (I6J17_05350) flgK 1059349..1060965 (-) 1617 WP_029142536.1 flagellar hook-associated protein FlgK -
  I6J17_RS05355 (I6J17_05355) - 1060988..1061458 (-) 471 WP_029142535.1 flagellar protein FlgN -
  I6J17_RS05360 (I6J17_05360) flgM 1061471..1061737 (-) 267 WP_013858611.1 flagellar biosynthesis anti-sigma factor FlgM -
  I6J17_RS05365 (I6J17_05365) - 1061808..1062203 (-) 396 WP_029142534.1 TIGR03826 family flagellar region protein -
  I6J17_RS05370 (I6J17_05370) - 1062270..1062977 (-) 708 WP_029142533.1 ComF family protein -
  I6J17_RS05375 (I6J17_05375) comFA 1062970..1064355 (-) 1386 WP_029142532.1 DEAD/DEAH box helicase Machinery gene
  I6J17_RS05380 (I6J17_05380) - 1064651..1065493 (-) 843 WP_017553672.1 DegV family protein -
  I6J17_RS05385 (I6J17_05385) - 1066059..1067483 (+) 1425 WP_035180264.1 amino acid permease -
  I6J17_RS05390 (I6J17_05390) - 1067764..1068447 (-) 684 WP_013858603.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51659.96 Da        Isoelectric Point: 8.7826

>NTDB_id=526609 I6J17_RS05375 WP_029142532.1 1062970..1064355(-) (comFA) [Heyndrickxia coagulans strain FDAARGOS_1160]
MPSVFSEQLQRHLAGRILLEPEIPFSPELVEQHLKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLFTWAGPAPAFHPPRHPLHWEGTLSEGQQAASEAVKIAILQKNELLVWAVCGAGKTEVLFNGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDILIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDAVIVDEVDAFPYTFD
ETLQRAVQKAAKDRCARIYLTATPGETWQLECKAGKRPFVTIPARYHRKPLPVPIFKWAGNWRRKFEKGQLPVPVEAWVK
KRLETGKQALLFLPNIRLMKKAEPVFKQLHPSIESVHAEDPERKEKVEKMRARETPLLLTTTILERGVTFPDIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPNGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=526609 I6J17_RS05375 WP_029142532.1 1062970..1064355(-) (comFA) [Heyndrickxia coagulans strain FDAARGOS_1160]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACGCCACCTCGCAGGGAGGATCCTGCTCGAACCGGAAATCCCTTTTTCGCC
GGAACTAGTCGAACAGCACTTAAAACAAGGCTGGATCCGCGCCGAGCCTGCGATTCAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATCTATTGC
CGGAACTGCCTGATGATGGGGCGGGTTACCGCATGCAAGCCGCTTTTCACATGGGCAGGCCCTGCGCCCGCATTCCACCC
GCCCCGGCACCCGCTCCATTGGGAAGGGACCCTCTCTGAAGGGCAGCAGGCCGCATCCGAAGCGGTCAAAATAGCCATTC
TCCAAAAAAATGAGCTCTTGGTTTGGGCGGTTTGCGGAGCAGGTAAAACAGAGGTCCTTTTTAACGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCGACACCAAGGACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCTGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTGATCTCCACTA
CCCACCAGCTGTACCGCTTCGCATCTGCTTTCGATGCCGTAATTGTGGATGAGGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGCGCGCCGTCCAAAAAGCGGCAAAAGATAGGTGCGCCCGCATTTATCTTACCGCAACGCCGGGTGAAAC
ATGGCAACTTGAATGCAAGGCAGGCAAGCGCCCGTTTGTCACGATCCCGGCCCGTTACCACCGCAAGCCCCTCCCCGTTC
CTATATTCAAATGGGCAGGCAACTGGCGGAGAAAGTTTGAAAAAGGACAGCTCCCGGTTCCAGTTGAAGCATGGGTAAAA
AAGAGACTTGAAACCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATTCGCCTCATGAAAAAAGCAGAACCGGTTTTTAA
ACAACTGCATCCGTCGATTGAATCGGTGCACGCAGAAGACCCGGAACGGAAAGAAAAAGTGGAAAAGATGCGCGCCCGCG
AAACGCCGCTTTTGCTGACGACGACCATTCTTGAACGCGGCGTCACGTTCCCGGACATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCCATTTTTACGGAAGCCGCCCTCGTCCAGATCGCGGGCCGGGCTGGGAGAAGCGCCGATTTCCCAAATGGGGA
TGTTACGTTCTTCCATTATGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-420)

Type III restriction enzyme, res subunit (ResIII)

(118-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BTT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.669

98.265

0.488
  comFA Latilactobacillus sakei subsp. sakei 23K

40.238

91.106

0.367