Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6J17_RS05110 Genome accession   NZ_CP068054
Coordinates   1008820..1009770 (-) Length   316 a.a.
NCBI ID   WP_029142520.1    Uniprot ID   A0A8B4BZ03
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003820..1014770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS05085 (I6J17_05085) - 1004033..1005448 (+) 1416 WP_042512470.1 ISLre2 family transposase -
  I6J17_RS05090 (I6J17_05090) - 1005879..1006115 (+) 237 WP_026104642.1 4Fe-4S binding protein -
  I6J17_RS05095 (I6J17_05095) - 1006172..1007110 (-) 939 WP_035176375.1 siderophore ABC transporter substrate-binding protein -
  I6J17_RS05100 (I6J17_05100) - 1007125..1007883 (-) 759 WP_029142522.1 ABC transporter ATP-binding protein -
  I6J17_RS05105 (I6J17_05105) - 1007877..1008827 (-) 951 WP_029142521.1 iron chelate uptake ABC transporter family permease subunit -
  I6J17_RS05110 (I6J17_05110) ceuB 1008820..1009770 (-) 951 WP_029142520.1 ABC transporter permease Machinery gene
  I6J17_RS05115 (I6J17_05115) - 1010029..1011216 (-) 1188 WP_029142519.1 PDZ domain-containing protein -
  I6J17_RS05120 (I6J17_05120) - 1011494..1012930 (-) 1437 WP_029142518.1 S41 family peptidase -
  I6J17_RS05125 (I6J17_05125) - 1013375..1014358 (-) 984 WP_029142516.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34396.51 Da        Isoelectric Point: 9.9873

>NTDB_id=526608 I6J17_RS05110 WP_029142520.1 1008820..1009770(-) (ceuB) [Heyndrickxia coagulans strain FDAARGOS_1160]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSKEQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKYDLV
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVINIGLALVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=526608 I6J17_RS05110 WP_029142520.1 1008820..1009770(-) (ceuB) [Heyndrickxia coagulans strain FDAARGOS_1160]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAAGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGCCTGATCAGCATTATCA
TTGCGGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGCTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATCCTGTTTTCTGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCCTTTTGCTTTGCCCTGGCCGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGTTCTGTATCTACTTTTTTTGCGTATAAATACGACTTAGTC
CAGAGCCTTTCTTCATGGCTGCAAGGCGATTTTTCAGGCGTACTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
GGCCGTTTTGGTCGCGTATGTGTTTGCCAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAATCTTGGCT
TGAATTACAAGCAGGTGATCAATATCGGCCTTGCCCTTGTCGCGCTGATTACTTCGGCAACGGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAACATTGTGTCCATTTATCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTGTTTTGCGATATTTTGGGGCGTCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGGCACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BZ03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513