Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6J17_RS00400 Genome accession   NZ_CP068054
Coordinates   67514..69217 (+) Length   567 a.a.
NCBI ID   WP_029142206.1    Uniprot ID   A0A8B4BWY4
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62514..74217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS00375 (I6J17_00375) - 62911..63138 (+) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -
  I6J17_RS00380 (I6J17_00380) - 63141..64010 (+) 870 WP_029142203.1 polyprenyl synthetase family protein -
  I6J17_RS00385 (I6J17_00385) dxs 64157..66058 (+) 1902 WP_029142204.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I6J17_RS00390 (I6J17_00390) - 66059..66883 (+) 825 WP_029142205.1 TlyA family RNA methyltransferase -
  I6J17_RS00395 (I6J17_00395) argR 67047..67496 (+) 450 WP_017553061.1 transcriptional regulator ArgR -
  I6J17_RS00400 (I6J17_00400) recN 67514..69217 (+) 1704 WP_029142206.1 DNA repair protein RecN Machinery gene
  I6J17_RS00405 (I6J17_00405) spoIVB 69397..70680 (+) 1284 WP_029142207.1 SpoIVB peptidase -
  I6J17_RS00410 (I6J17_00410) spo0A 70847..71632 (+) 786 WP_017553057.1 sporulation transcription factor Spo0A -
  I6J17_RS00415 (I6J17_00415) - 71756..72499 (+) 744 WP_029142208.1 glycerophosphodiester phosphodiesterase -
  I6J17_RS00420 (I6J17_00420) - 72509..72751 (-) 243 WP_013859596.1 DUF2627 domain-containing protein -
  I6J17_RS00425 (I6J17_00425) - 72885..73226 (+) 342 WP_013859595.1 sigma-54 specific transcriptional regulator -
  I6J17_RS00430 (I6J17_00430) - 73350..73502 (+) 153 WP_019720621.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64526.36 Da        Isoelectric Point: 4.8309

>NTDB_id=526590 I6J17_RS00400 WP_029142206.1 67514..69217(+) (recN) [Heyndrickxia coagulans strain FDAARGOS_1160]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMERA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNAGYEALAGE
QHGLDWLSLAMSHLETAAEVDGGLSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSTI
EEILEYGSKIEEEIESIVNRDHHVELLQKELQTVKRDLYLEAKQLSDLRKKWAEKLTENIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPSKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYHISVHSQVLCITHLPQVAAMADTHLLIMKETEKGRTRTKVKPLEQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=526590 I6J17_RS00400 WP_029142206.1 67514..69217(+) (recN) [Heyndrickxia coagulans strain FDAARGOS_1160]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCGCTAACCCTCTCATTTGAAGCCGGGCTGACTGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCGATCCAGCTTTTAACAGGCGGGAGAGGGTCATCGGAGT
TTGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGTTTATTTCTGGTCGAAGACGGCCATCCGTGTATGGAGCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTGATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTCTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCGCTGCTTGACCAGTACGGGCAAAGCGAGATCGAAACGGCCCTCCTT
GATTACGAAAAATTATATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTTGC
CCAGCGCCTTGACCTCATCCAGTTCCAGCATGAGGAAATCCAAAACGCAGGGCTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAACGCGGGGTATGAAGCGCTTGCCGGGGAA
CAGCACGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCCGAAGTGGATGGCGGGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCGATCCGTTCCCGGCTTGACGGGCTTGAAT
TTGACCCGGAACGGCTTAACGTGATTGAAGCGCGGCTGAATGAGATTAACCAGTTAAAACGAAAATACGGCAGCACGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATTGAATCGATCGTAAACCGCGACCATCATGTAGAGCTTTT
GCAAAAAGAATTGCAGACGGTAAAACGCGATCTTTATTTGGAAGCCAAGCAGCTCAGCGATTTGCGCAAAAAATGGGCGG
AAAAGCTGACTGAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTTAGGCGCGACGGGCTCGATCAGGTTGAATTTTACATTTCCAC
CAACCCGGGCGAACCGTCTAAACCGCTCGCAAAAACTGCTTCGGGCGGGGAATTGTCGCGGATTATGCTGGCATTGAAAA
CGATTTTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGATACCGGCGTAAGCGGCCGCGTAGCACAG
GCGATTGCGGAAAAAATTTACCATATCTCGGTCCATTCGCAAGTCCTTTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGACACGCATCTGCTGATCATGAAAGAAACCGAAAAGGGGAGAACGCGGACAAAAGTGAAGCCTTTGGAGCAGGAAG
AAAAAATTAAAGAAATCGGCCGCATGATTTCAGGTGTTGAAATGACAGAACTGACAAGACAGCATGCGAAAGAGCTCCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BWY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.337

100

0.6