Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6J17_RS00160 Genome accession   NZ_CP068054
Coordinates   27827..28942 (+) Length   371 a.a.
NCBI ID   WP_029142064.1    Uniprot ID   K4MYK4
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 22827..33942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS00125 (I6J17_00125) - 22839..24005 (+) 1167 WP_029142060.1 rhomboid family intramembrane serine protease -
  I6J17_RS00130 (I6J17_00130) - 24314..24535 (+) 222 WP_029142061.1 YqgQ family protein -
  I6J17_RS00135 (I6J17_00135) - 24528..25496 (+) 969 WP_029142062.1 ROK family glucokinase -
  I6J17_RS00140 (I6J17_00140) - 25595..25768 (-) 174 WP_019720590.1 DUF2759 domain-containing protein -
  I6J17_RS00145 (I6J17_00145) - 25898..26527 (+) 630 WP_013859649.1 MBL fold metallo-hydrolase -
  I6J17_RS00150 (I6J17_00150) - 26597..26839 (-) 243 WP_014098019.1 DUF2626 domain-containing protein -
  I6J17_RS00155 (I6J17_00155) - 26917..27633 (-) 717 WP_029142063.1 metalloregulator ArsR/SmtB family transcription factor -
  I6J17_RS00160 (I6J17_00160) comGA 27827..28942 (+) 1116 WP_029142064.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J17_RS00165 (I6J17_00165) comGB 28944..29906 (+) 963 WP_029142065.1 competence type IV pilus assembly protein ComGB -
  I6J17_RS00170 (I6J17_00170) comGC 29975..30286 (+) 312 WP_029142066.1 competence type IV pilus major pilin ComGC -
  I6J17_RS00175 (I6J17_00175) comGD 30283..30726 (+) 444 WP_029142067.1 competence type IV pilus minor pilin ComGD -
  I6J17_RS00180 (I6J17_00180) - 30713..31021 (+) 309 WP_029142068.1 type II secretion system protein -
  I6J17_RS00185 (I6J17_00185) comGF 30984..31466 (+) 483 WP_029142069.1 competence type IV pilus minor pilin ComGF -
  I6J17_RS00190 (I6J17_00190) comGG 31463..31831 (+) 369 WP_029142070.1 competence type IV pilus minor pilin ComGG -
  I6J17_RS00195 (I6J17_00195) - 31816..32385 (+) 570 WP_236579031.1 shikimate kinase -
  I6J17_RS00200 (I6J17_00200) - 32372..32548 (+) 177 WP_073193839.1 YqzE family protein -
  I6J17_RS00205 (I6J17_00205) - 32582..33373 (-) 792 WP_029142072.1 YqhG family protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41922.45 Da        Isoelectric Point: 9.7653

>NTDB_id=526589 I6J17_RS00160 WP_029142064.1 27827..28942(+) (comGA) [Heyndrickxia coagulans strain FDAARGOS_1160]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAI
NVLQQAVSLRISTLPTSLSKESLVIRILPHEEQFQLSQISLFQSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAVRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDCPGSRKKRQTAVYELLYGKNLQRVLKEAKGE
QVRYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTTGALSYPGR

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=526589 I6J17_RS00160 WP_029142064.1 27827..28942(+) (comGA) [Heyndrickxia coagulans strain FDAARGOS_1160]
ATGTCGGTAGAAAAAATCGCGGAACTATTGATTGGACAGGCGGTGAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAGAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTAAAATTTATGTCTTCCATGGATATCAGTGAAAAACGAAAGCCCCAAAGCGGGTCGTTTGCCATA
AACGTTTTGCAGCAAGCGGTCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTCATCCGGAT
TTTGCCCCACGAAGAACAATTCCAGCTCAGCCAAATTTCACTTTTTCAATCGAGCACGAAAAAATTAATGGCGCTATTAA
ACCATTCGCACGGCATGCTGATTTTCAGCGGTCCGACCGGAAGCGGCAAGTCGACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTAATTACACTGGAAGACCCTGTTGAAAAACAAAGCGATTCGTTTTTGCAGGTGCA
GGTGAATGAAAAAGCAGGCATTACTTATAGCACAGGGCTGAAAGCAATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGCGATGCCGAAACAGCAAGAATTGCGGTCCGCGCATCGCTTACCGGCCATCTTGTCCTGACGACTTTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTCGGCGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
TGTCAGCGCACAGCGGCTGATTACATTGCGTTGTCCGGTATGCGGCGGCATCCGCTGCCCGCATGATTGTCCCGGCAGCC
GGAAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGGGTGCTGAAAGAAGCAAAGGGGGAA
CAGGTCCGCTACCATTATCCGACGCTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGAAGAAGAGTA
TCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACAACAGGGGCGCTTTCTTACCCGGGTCGGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4MYK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.648

95.687

0.523