Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6J18_RS13420 Genome accession   NZ_CP068053
Coordinates   2647307..2648260 (-) Length   317 a.a.
NCBI ID   WP_040376713.1    Uniprot ID   A0A974NIR3
Organism   Peribacillus psychrosaccharolyticus strain FDAARGOS_1161     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2642307..2653260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J18_RS13390 (I6J18_13390) - 2642339..2642749 (-) 411 WP_040376719.1 carboxypeptidase regulatory-like domain-containing protein -
  I6J18_RS13395 (I6J18_13395) - 2642980..2643741 (+) 762 WP_040376718.1 glucose 1-dehydrogenase -
  I6J18_RS13400 (I6J18_13400) - 2644035..2644361 (-) 327 WP_040376717.1 antibiotic biosynthesis monooxygenase -
  I6J18_RS13405 (I6J18_13405) - 2644420..2645463 (-) 1044 WP_040376716.1 siderophore ABC transporter substrate-binding protein -
  I6J18_RS13410 (I6J18_13410) - 2645585..2646349 (-) 765 WP_040376715.1 ABC transporter ATP-binding protein -
  I6J18_RS13415 (I6J18_13415) - 2646346..2647317 (-) 972 WP_040376714.1 iron chelate uptake ABC transporter family permease subunit -
  I6J18_RS13420 (I6J18_13420) ceuB 2647307..2648260 (-) 954 WP_040376713.1 ABC transporter permease Machinery gene
  I6J18_RS13425 (I6J18_13425) - 2648506..2649906 (-) 1401 WP_040376712.1 MDR family MFS transporter -
  I6J18_RS13430 (I6J18_13430) - 2650395..2650904 (-) 510 WP_040376711.1 YfiT family bacillithiol transferase -
  I6J18_RS13435 (I6J18_13435) glmS 2651077..2652879 (-) 1803 WP_040376710.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34512.79 Da        Isoelectric Point: 9.7461

>NTDB_id=526557 I6J18_RS13420 WP_040376713.1 2647307..2648260(-) (ceuB) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
MRLWMLVVAAVILSFVSLFIGAIDIKPTDLLDFQSDEVQIFLVSRLPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGIVIAMIFFTNVTYMQKIIFGFAFALIGTFIFMRLLERIKFKDVIFVPLIGIMYGNIISSVTTFLGYEADIL
QNVSAFFLGSFTLVVSGRYELLYVAVPAIILAYIFANKFMVAGMGEDFAKNLGLSYKTVLNIGLVLIAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTIVLGAVFLLVCDILSRIVVAPYEIPVNTTVAVIGSAIFLIMLLRGKAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=526557 I6J18_RS13420 WP_040376713.1 2647307..2648260(-) (ceuB) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
ATGAGATTATGGATGTTAGTGGTTGCCGCTGTTATCTTATCTTTCGTCTCACTGTTTATAGGAGCCATAGATATTAAGCC
AACTGATTTATTGGATTTCCAATCAGATGAAGTTCAAATTTTTCTGGTAAGTCGTTTACCACGATTAATGGCTATTATCT
TAGCTGGTGCAGGTATGAGTATTGCCGGTTTGATTATGCAATCGTTGAGCCGCAATAAATTTGTATCTCCTACAACAGCA
GGTACGTTAGATGCGGCAAAATTAGGTATTGTTATTGCAATGATTTTTTTCACGAATGTAACGTACATGCAGAAAATTAT
TTTTGGTTTTGCTTTTGCCTTAATCGGAACGTTTATCTTTATGCGTCTATTAGAACGCATTAAATTCAAAGATGTTATTT
TCGTACCACTAATCGGTATTATGTACGGAAATATCATTTCATCAGTGACAACCTTCTTAGGCTATGAAGCAGATATATTA
CAAAACGTGAGTGCATTCTTCCTAGGCAGCTTCACGTTAGTTGTTTCAGGGCGCTATGAGTTACTTTATGTAGCAGTACC
AGCAATCATTCTTGCTTATATTTTTGCAAATAAGTTCATGGTTGCAGGGATGGGCGAGGATTTTGCGAAGAACCTAGGTT
TGAGTTATAAAACGGTATTGAATATCGGCCTCGTTTTAATCGCAGTTATTTCAACGACAGTTGTTTTAACAGTAGGCGTT
ATCCCATTCTTAGGATTGATTGTTCCTAATATCGTGTCGCTGTATCTAGGGGATAATTTACGTAAAACAATTCCTCATAC
TATTGTGCTTGGTGCCGTATTCCTCCTTGTGTGTGATATTCTGAGCCGTATTGTTGTAGCTCCATATGAAATTCCGGTTA
ATACAACGGTAGCGGTTATCGGTAGTGCAATCTTCTTAATCATGTTACTTAGGGGGAAAGCATATGCAAAGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

99.685

0.508