Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JKG63_RS12290 Genome accession   NZ_CP068049
Coordinates   2819069..2820445 (-) Length   458 a.a.
NCBI ID   WP_013698533.1    Uniprot ID   A0AB38TL25
Organism   Burkholderia gladioli strain BBB-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2814069..2825445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKG63_RS12270 cls 2814462..2815901 (+) 1440 WP_201446154.1 cardiolipin synthase -
  JKG63_RS12275 - 2815933..2816418 (-) 486 WP_186061948.1 glutathione peroxidase -
  JKG63_RS12280 - 2816609..2818534 (+) 1926 WP_186099620.1 ATP-binding cassette domain-containing protein -
  JKG63_RS12285 - 2818674..2818937 (-) 264 WP_013698532.1 DUF2866 domain-containing protein -
  JKG63_RS12290 radA 2819069..2820445 (-) 1377 WP_013698533.1 DNA repair protein RadA Machinery gene
  JKG63_RS12295 alr 2820456..2821526 (-) 1071 WP_036050844.1 alanine racemase -
  JKG63_RS12300 lplT 2821738..2823045 (+) 1308 WP_060003371.1 lysophospholipid transporter LplT -
  JKG63_RS12305 thiD 2823146..2823958 (+) 813 WP_036050843.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JKG63_RS12310 - 2824038..2824991 (-) 954 WP_186111598.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48728.15 Da        Isoelectric Point: 7.2038

>NTDB_id=526530 JKG63_RS12290 WP_013698533.1 2819069..2820445(-) (radA) [Burkholderia gladioli strain BBB-01]
MAKQKTVYICTECGGQSLKWQGQCPSCHAWNTLVESAAETPSQHRFQALAKSAPVQRLADIDAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIAAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTIALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=526530 JKG63_RS12290 WP_013698533.1 2819069..2820445(-) (radA) [Burkholderia gladioli strain BBB-01]
GTGGCGAAACAGAAAACGGTCTATATCTGCACTGAATGCGGCGGCCAGTCGCTGAAATGGCAGGGCCAGTGCCCGTCCTG
CCATGCCTGGAACACGCTGGTCGAATCGGCCGCCGAAACCCCTTCGCAGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGATATCGACGCGGCCGACGTGCCGCGCTTTTCCACCGGCATCGGCGAGTTCGACCGCGTGCTC
GGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGTAAATCCACCCTGTTGCTGCAGTC
GCTGGCCCAGCTGGCCAGCCAGCGCCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCCCTGCGCGCCC
AGCGCCTGGCCCTGCTCGATCACGGCGGCGACGCCGCCGATCTCAAGCTGCTGGCGGAAATCCAGCTCGAGAAGATCCAG
GCCACGATCGCCGCCGAGCGGCCCGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACCTCGGC
GCCCGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCAGCTCACGCGCATCGCCAAGCAGTCGGGCACCGCGATCATCA
TGGTTGGCCACGTCACCAAGGAGGGGGCGCTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTACTTC
GAGGGCGACACGCATTCTTCCTACCGGCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTGTT
CGCCATGACCGAGCGCGGCCTGCGCGGCGTGTCCAACCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCGG
GTTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGACACCGCCAACGTG
CCGAATCCGCGGCGCCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCATGCGGG
CATCGCCTGCTTCGACCAGGACGTGTTCCTGAACGCGGTGGGGGGCGTCAAGATTACCGAGCCGGCCGCCGACCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGCTTGATCGTGTTCGGCGAGGTCGGGCTGGCC
GGCGAGATCCGGCCTTCGCCGCGCGGCCAGGAGCGTCTGCGCGAGGCGGCCAAGCTGGGTTTCACGATCGCGCTGATTCC
CAAGGCCAATGCGCCCAAGCAGCCGATCGAGGGCCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.707

100

0.493
  radA Streptococcus pneumoniae Rx1

46.32

100

0.467
  radA Streptococcus pneumoniae D39

46.32

100

0.467
  radA Streptococcus pneumoniae R6

46.32

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.32

100

0.467
  radA Streptococcus mitis SK321

46.507

100

0.465
  radA Streptococcus mitis NCTC 12261

46.171

99.782

0.461