Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PA1R_RS20115 Genome accession   NC_022806
Coordinates   4366599..4366964 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa PA1R     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4361599..4371964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA1R_RS20085 (PA1R_gp3914) pyrR 4362221..4362733 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PA1R_RS20090 (PA1R_gp3915) ruvX 4362845..4363279 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PA1R_RS20095 (PA1R_gp3916) - 4363279..4363848 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PA1R_RS20100 (PA1R_gp3917) - 4363897..4364790 (-) 894 WP_023518289.1 energy transducer TonB -
  PA1R_RS20105 (PA1R_gp3918) gshB 4364937..4365890 (-) 954 WP_023518290.1 glutathione synthase -
  PA1R_RS20110 (PA1R_gp3919) pilG 4366145..4366552 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PA1R_RS20115 (PA1R_gp3920) pilH 4366599..4366964 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PA1R_RS20120 (PA1R_gp3921) - 4367015..4367551 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PA1R_RS20125 (PA1R_gp3922) pilJ 4367636..4369684 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PA1R_RS20130 (PA1R_gp3923) pilK 4369745..4370620 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=52653 PA1R_RS20115 WP_003084587.1 4366599..4366964(+) (pilH) [Pseudomonas aeruginosa PA1R]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=52653 PA1R_RS20115 WP_003084587.1 4366599..4366964(+) (pilH) [Pseudomonas aeruginosa PA1R]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment