Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JKA73_RS05950 Genome accession   NZ_CP068048
Coordinates   1430896..1432263 (-) Length   455 a.a.
NCBI ID   WP_140861020.1    Uniprot ID   -
Organism   Myxococcus xanthus strain R31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425896..1437263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKA73_RS05935 (JKA73_05935) - 1426613..1428403 (+) 1791 WP_225888569.1 methyl-accepting chemotaxis protein -
  JKA73_RS05940 (JKA73_05940) - 1428387..1429880 (-) 1494 WP_201424133.1 ATP-binding protein -
  JKA73_RS05945 (JKA73_05945) - 1430189..1430740 (+) 552 WP_201424134.1 dihydrofolate reductase family protein -
  JKA73_RS05950 (JKA73_05950) radA 1430896..1432263 (-) 1368 WP_140861020.1 DNA repair protein RadA Machinery gene
  JKA73_RS05955 (JKA73_05955) - 1432446..1432715 (+) 270 WP_020478235.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  JKA73_RS05960 (JKA73_05960) bioB 1432856..1433896 (+) 1041 WP_011551374.1 biotin synthase BioB -
  JKA73_RS05965 (JKA73_05965) bioF 1433903..1435078 (+) 1176 WP_201424135.1 8-amino-7-oxononanoate synthase -
  JKA73_RS05970 (JKA73_05970) bioD 1435071..1435754 (+) 684 WP_201424136.1 dethiobiotin synthase -
  JKA73_RS05975 (JKA73_05975) - 1435887..1436165 (+) 279 WP_026114139.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48300.74 Da        Isoelectric Point: 7.6453

>NTDB_id=526511 JKA73_RS05950 WP_140861020.1 1430896..1432263(-) (radA) [Myxococcus xanthus strain R31]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGSARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLAAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=526511 JKA73_RS05950 WP_140861020.1 1430896..1432263(-) (radA) [Myxococcus xanthus strain R31]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
TGGCGCGTGGAGTTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAGCGACGTCCGGCCTGGGGTGCCTCGGGCGGTT
CGGCGCGGCCCATGCTGCTCAAGGAAGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAATTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGTGGCTCCATCGTGCTGCTGGGTGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGTTGGACAGGCTGGCGCGTCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGACAGACGAAGATGC
GCGCCGAGCGGCTCCGAGTGGAGGGAGACGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGGCGGCGACG
GAGGCGTTGAAGCCCCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTCGCGGGCCGGCTGATGGCCTACGCGAAGCGCACGGGGGTGCCCACGTTCCTGGTAGGCC
ACGTGACGAAGGAAGGCTCCATCGCGGGCCCGCGCGTGTTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGGGGCCACCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGTCCGACCCCTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGTACGCGCCCGCTGCTGGTGGAGGTGCAAGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAAGAGATTCCGCT
GGTGGGCTGCGACTTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACCGAGCCCGCGTGTGACCTCGCGGTATGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGTCCGTTGGATCCGAAGACGTTGGTGCTGGGAGAAGTGGGCCTCGCGGGAGAGGTG
CGCGCAGTGGGCCAGGTGGAGCCGCGACTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCTGGCAG
CGCGCGGCGCCTGGAGGATGCGGGTCCGAAGATGAAGATCGTCGGCGTGGAGACGCTCGGCGATGCGCTGGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(80-219)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.187

100

0.532
  radA Streptococcus mitis SK321

52.193

100

0.523
  radA Streptococcus pneumoniae Rx1

51.868

100

0.519
  radA Streptococcus pneumoniae D39

51.868

100

0.519
  radA Streptococcus pneumoniae R6

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.868

100

0.519
  radA Streptococcus mitis NCTC 12261

51.648

100

0.516