Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | JJE78_RS08560 | Genome accession | NZ_CP068041 |
| Coordinates | 1784054..1784683 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain XJW9B277 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1756218..1793855 | 1784054..1784683 | within | 0 |
Gene organization within MGE regions
Location: 1756218..1793855
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJE78_RS08430 (JJE78_08380) | ssuD | 1756423..1757568 (-) | 1146 | WP_000056006.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| JJE78_RS08435 (JJE78_08385) | ssuA | 1757565..1758524 (-) | 960 | WP_001244308.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| JJE78_RS08440 (JJE78_08390) | ssuE | 1758517..1759092 (-) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| JJE78_RS08445 (JJE78_08395) | elfA | 1759448..1759987 (+) | 540 | WP_000750293.1 | fimbrial protein | - |
| JJE78_RS08450 (JJE78_08400) | elfD | 1760070..1760771 (+) | 702 | WP_001295349.1 | molecular chaperone | - |
| JJE78_RS08455 (JJE78_08405) | elfC | 1760796..1763396 (+) | 2601 | WP_000286312.1 | fimbrial biogenesis usher protein | - |
| JJE78_RS08460 (JJE78_08410) | - | 1763387..1764028 (+) | 642 | Protein_1680 | fimbrial protein | - |
| JJE78_RS08465 (JJE78_08415) | - | 1764119..1765347 (+) | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| JJE78_RS08470 (JJE78_08420) | - | 1765359..1765793 (+) | 435 | Protein_1682 | fimbrial protein | - |
| JJE78_RS08475 (JJE78_08425) | ycbU | 1765805..1766347 (+) | 543 | WP_000730614.1 | fimbrial protein | - |
| JJE78_RS08480 (JJE78_08430) | ycbV | 1766355..1766870 (+) | 516 | WP_000919497.1 | fimbrial protein | - |
| JJE78_RS08485 (JJE78_08435) | ycbF | 1766836..1767573 (+) | 738 | WP_001111465.1 | fimbrial chaperone | - |
| JJE78_RS08490 (JJE78_08440) | pyrD | 1767684..1768694 (+) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| JJE78_RS08495 (JJE78_08445) | zapC | 1768868..1769410 (+) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| JJE78_RS08500 (JJE78_08450) | ycbX | 1769407..1770516 (-) | 1110 | WP_000212422.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| JJE78_RS08505 (JJE78_08455) | rlmKL | 1770760..1772868 (+) | 2109 | WP_001086538.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| JJE78_RS08510 (JJE78_08460) | uup | 1772880..1774787 (+) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| JJE78_RS08515 (JJE78_08465) | pqiA | 1774917..1776170 (+) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| JJE78_RS08520 (JJE78_08470) | pqiB | 1776175..1777815 (+) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| JJE78_RS08525 (JJE78_08475) | pqiC | 1777812..1778375 (+) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| JJE78_RS08530 (JJE78_08480) | rmf | 1778631..1778798 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| JJE78_RS08535 (JJE78_08485) | fabA | 1778868..1779386 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| JJE78_RS08540 (JJE78_08490) | ycbZ | 1779455..1781215 (-) | 1761 | WP_000152888.1 | Lon protease family protein | - |
| JJE78_RS08545 (JJE78_08495) | matP | 1781401..1781853 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| JJE78_RS08550 (JJE78_08500) | ompA | 1781929..1782969 (-) | 1041 | WP_000750416.1 | porin OmpA | - |
| JJE78_RS08555 (JJE78_08505) | sulA | 1783326..1783835 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| JJE78_RS08560 (JJE78_08510) | sxy/tfoX | 1784054..1784683 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| JJE78_RS08565 (JJE78_08515) | yccS | 1784646..1786808 (-) | 2163 | WP_072310825.1 | YccS family putative transporter | - |
| JJE78_RS08570 (JJE78_08520) | yccF | 1786818..1787264 (-) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| JJE78_RS08575 (JJE78_08525) | helD | 1787387..1789441 (+) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| JJE78_RS08580 (JJE78_08530) | mgsA | 1789473..1789931 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| JJE78_RS08585 (JJE78_08535) | yccT | 1790027..1790689 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| JJE78_RS08590 (JJE78_08540) | yccU | 1790862..1791275 (+) | 414 | WP_001301418.1 | CoA-binding protein | - |
| JJE78_RS08595 (JJE78_08545) | hspQ | 1791320..1791637 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| JJE78_RS08600 (JJE78_08550) | rlmI | 1791695..1792885 (-) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| JJE78_RS08605 (JJE78_08555) | yccX | 1792980..1793258 (+) | 279 | WP_000048252.1 | acylphosphatase | - |
| JJE78_RS08610 (JJE78_08560) | tusE | 1793255..1793584 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=526492 JJE78_RS08560 WP_000839153.1 1784054..1784683(+) (sxy/tfoX) [Escherichia coli strain XJW9B277]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=526492 JJE78_RS08560 WP_000839153.1 1784054..1784683(+) (sxy/tfoX) [Escherichia coli strain XJW9B277]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |