Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K5P77_RS09220 Genome accession   NZ_CP082129
Coordinates   1934174..1935601 (-) Length   475 a.a.
NCBI ID   WP_073849938.1    Uniprot ID   -
Organism   Escherichia coli strain NDM_11.16372     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929174..1940601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P77_RS09190 (K5P77_09190) yeeZ 1929229..1930053 (+) 825 WP_000754762.1 SDR family oxidoreductase -
  K5P77_RS09195 (K5P77_09195) yeeY 1930099..1931028 (+) 930 WP_087760827.1 LysR substrate-binding domain-containing protein -
  K5P77_RS09200 (K5P77_09200) yoeI 1931243..1931305 (+) 63 WP_010723108.1 membrane protein YoeI -
  K5P77_RS09205 (K5P77_09205) plaP 1931295..1932653 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K5P77_RS09210 (K5P77_09210) tsuA 1932832..1933890 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  K5P77_RS09215 (K5P77_09215) tsuB 1933904..1934131 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K5P77_RS09220 (K5P77_09220) sbcB 1934174..1935601 (-) 1428 WP_073849938.1 exodeoxyribonuclease I Machinery gene
  K5P77_RS09225 (K5P77_09225) dacD 1935810..1936976 (+) 1167 Protein_1826 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K5P77_RS09230 (K5P77_09230) sbmC 1937094..1937567 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  K5P77_RS09235 (K5P77_09235) yeeA 1937765..1938823 (+) 1059 WP_001200892.1 FUSC family protein -
  K5P77_RS09240 (K5P77_09240) tmaR 1938995..1939324 (+) 330 WP_000450409.1 DUF496 family protein -
  K5P77_RS24445 - 1939425..1939790 (-) 366 WP_223350516.1 EutP/PduV family microcompartment system protein -
  K5P77_RS09250 (K5P77_09250) - 1940061..1940432 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4720

>NTDB_id=526474 K5P77_RS09220 WP_073849938.1 1934174..1935601(-) (sbcB) [Escherichia coli strain NDM_11.16372]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=526474 K5P77_RS09220 WP_073849938.1 1934174..1935601(-) (sbcB) [Escherichia coli strain NDM_11.16372]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581