Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JKF55_RS09280 Genome accession   NZ_CP068035
Coordinates   1985614..1986243 (+) Length   209 a.a.
NCBI ID   WP_021535003.1    Uniprot ID   -
Organism   Escherichia coli strain U90     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1980614..1991243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKF55_RS09260 (JKF55_09260) ycbZ 1981003..1982763 (-) 1761 WP_000156526.1 Lon protease family protein -
  JKF55_RS09265 (JKF55_09265) matP 1982949..1983401 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JKF55_RS09270 (JKF55_09270) ompA 1983477..1984529 (-) 1053 WP_001361736.1 porin OmpA -
  JKF55_RS09275 (JKF55_09275) sulA 1984886..1985395 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JKF55_RS09280 (JKF55_09280) sxy/tfoX 1985614..1986243 (+) 630 WP_021535003.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JKF55_RS09285 (JKF55_09285) yccS 1986206..1988368 (-) 2163 WP_000875044.1 YccS family putative transporter -
  JKF55_RS09290 (JKF55_09290) yccF 1988378..1988824 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JKF55_RS09295 (JKF55_09295) helD 1988947..1991001 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.06 Da        Isoelectric Point: 9.2180

>NTDB_id=526474 JKF55_RS09280 WP_021535003.1 1985614..1986243(+) (sxy/tfoX) [Escherichia coli strain U90]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLLNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=526474 JKF55_RS09280 WP_021535003.1 1985614..1986243(+) (sxy/tfoX) [Escherichia coli strain U90]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCTCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995