Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJQ97_RS21480 Genome accession   NZ_CP068034
Coordinates   5076493..5077860 (-) Length   455 a.a.
NCBI ID   WP_096137708.1    Uniprot ID   -
Organism   Pseudomonas syringae strain BIM B-268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5071493..5082860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ97_RS21460 (JJQ97_21105) yjiA 5072445..5073422 (-) 978 WP_010418440.1 GTPase -
  JJQ97_RS21465 (JJQ97_21110) - 5073518..5073715 (-) 198 WP_003313802.1 YbdD/YjiX family protein -
  JJQ97_RS21470 (JJQ97_21115) - 5073743..5075818 (-) 2076 WP_201418506.1 carbon starvation CstA family protein -
  JJQ97_RS21475 (JJQ97_21120) - 5076104..5076478 (+) 375 WP_004411858.1 PilZ domain-containing protein -
  JJQ97_RS21480 (JJQ97_21125) radA 5076493..5077860 (-) 1368 WP_096137708.1 DNA repair protein RadA Machinery gene
  JJQ97_RS21485 (JJQ97_21130) mscL 5078057..5078503 (+) 447 WP_024649104.1 large-conductance mechanosensitive channel protein MscL -
  JJQ97_RS21490 (JJQ97_21135) - 5080104..5080880 (-) 777 WP_201418507.1 ferredoxin--NADP reductase -
  JJQ97_RS21495 (JJQ97_21140) - 5081217..5081450 (+) 234 WP_003313809.1 helix-turn-helix transcriptional regulator -
  JJQ97_RS21500 (JJQ97_21145) - 5081581..5082705 (+) 1125 WP_201418508.1 methyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48941.54 Da        Isoelectric Point: 7.4047

>NTDB_id=526461 JJQ97_RS21480 WP_096137708.1 5076493..5077860(-) (radA) [Pseudomonas syringae strain BIM B-268]
MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAREEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=526461 JJQ97_RS21480 WP_096137708.1 5076493..5077860(-) (radA) [Pseudomonas syringae strain BIM B-268]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGGCAGTGCAGCGAATG
CGGTGCCTGGAACACACTGGTCGAAACCATGATTGAAAGCGGTGCCGCCGCGCCGCCTACCGGGCGTACCGGCTGGACCG
GTTCGCAGGCGCAGATCAGGACCCTGGCAGAGGTCAGTGTCGAAGAAATCCCGCGCTTCTCCACCAACTCCACCGAGCTG
GACAGGGTGCTCGGCGGCGGTCTGGTTGACGGCTCGGTGGTGCTGATTGGCGGCGATCCCGGCATCGGCAAGTCCACGAT
CCTCTTGCAGACGCTGTGCAATATCGCCCAGCGCATGCCTGCGCTGTATGTCACCGGTGAGGAATCCCAGCAGCAGGTCG
CCATGCGCGCCCGGCGCCTGGGACTGCCGCAGGACAAGCTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTGATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGTTGCAGTCGGCCCC
CGGCGGCGTGTCGCAGGTTCGCGAAAGCGCCGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGTCCGCGTGTGCTTGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAATCGGACGGTCGCTTGCGCCTGTTGCGCGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATCTTTCTCACCCGTGCGCGGGAAGAGGTGCCGGGCA
GTGTGGTCATGGCCACCTGGGAAGGCACGCGGCCGATGCTGGTGGAAGTGCAGGCACTGGTGGACGACAGTCACATGTCC
AACCCGCGCCGCGTAACGCTGGGGCTGGATCAGAATCGTCTGGCCATGCTGCTGGCAGTCCTGCATCGCCATGGCGGCAT
TCCCACCCACGATCAGGACGTGTTCCTCAACGTGGTAGGCGGCGTGAAAGTGCTGGAAACTGCCTCCGACCTGGCCTTGA
TGGCCGCGGTCATGTCCAGCCTGCGCAATCGTCCGCTGCCGCATGACTTGCTTGTGTTCGGTGAGGTAGGGCTGTCAGGT
GAAGTCAGGCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGTTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCCAAAGAAGCGCCGCCCGGCTTGCAGATCATTGCCGTTACGCGACTTGAACAGGCCCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468