Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DMB75_RS04060 Genome accession   NZ_CP068031
Coordinates   861555..862271 (-) Length   238 a.a.
NCBI ID   WP_130548242.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain DVP5-16-4677     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 856555..867271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB75_RS04040 (DMB75_004035) - 856936..857176 (+) 241 Protein_824 sulfurtransferase TusA family protein -
  DMB75_RS04045 (DMB75_004040) - 857351..858596 (+) 1246 Protein_825 ammonium transporter -
  DMB75_RS04050 (DMB75_004045) - 858741..859695 (+) 955 Protein_826 LacI family DNA-binding transcriptional regulator -
  DMB75_RS04055 (DMB75_004050) - 859961..861436 (+) 1476 WP_130548241.1 sucrose-6-phosphate hydrolase -
  DMB75_RS04060 (DMB75_004055) agrA 861555..862271 (-) 717 WP_130548242.1 quorum-sensing response regulator AgrA Regulator
  DMB75_RS04065 (DMB75_004060) agrC 862288..863577 (-) 1290 WP_130548243.1 quorum-sensing sensor histidine kinase AgrC -
  DMB75_RS04070 (DMB75_004065) agrD 863604..863744 (-) 141 WP_130548244.1 cyclic lactone autoinducer peptide AgrD -
  DMB75_RS04075 (DMB75_004070) - 863728..864312 (-) 585 WP_130548245.1 accessory gene regulator AgrB -
  DMB75_RS04080 (DMB75_004075) hld 864626..864706 (+) 81 WP_130548313.1 delta-hemolysin -
  DMB75_RS04085 (DMB75_004080) - 865083..865865 (-) 783 Protein_833 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27920.03 Da        Isoelectric Point: 6.3014

>NTDB_id=526395 DMB75_RS04060 WP_130548242.1 861555..862271(-) (agrA) [Staphylococcus saccharolyticus strain DVP5-16-4677]
MKIFVCEDDPRQRENIVSIIKNYIMIEEKPMELTLATNDPYEVLKQSKEMNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNIDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDNRFFRCHNSFVVNRHNIESIDSKERIVYFKNGEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=526395 DMB75_RS04060 WP_130548242.1 861555..862271(-) (agrA) [Staphylococcus saccharolyticus strain DVP5-16-4677]
ATGAAAATATTCGTTTGCGAAGATGATCCAAGACAAAGAGAGAACATAGTTTCAATTATAAAAAACTATATTATGATTGA
AGAAAAACCTATGGAATTGACTCTCGCAACTAATGATCCTTATGAGGTTCTAAAACAATCCAAAGAAATGAATGACATCG
GTTGTTATTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAACTTGCCAGCGAAATTCGTAAACATGATCCT
GTAGGCAATATTATATTTGTGACAAGTCATAGTGAACTCACTTATTTAACGTTTGTATATAAAGTCGCTGCAATGGACTT
TATTTTTAAAGATGATCCATCAGAACTTAAAATGAGAATTATTGATTGTCTTGAAACAGCACATACACGTTTAAAATTAC
TATCTAAAGAAAGTAATATAGATACCATTGAGTTGAAACGTGGTAGTAATTCGGTATATGTACAATATGACGATATCATG
TTTTTTGAATCATCTACAAAGTCACATCGTCTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTACGGAAATTTAAA
AGAATTGGCACAACTTGATAATCGCTTCTTTAGATGTCATAACAGCTTTGTAGTTAATAGACATAATATCGAGTCTATTG
ATTCTAAAGAACGTATCGTTTATTTTAAAAATGGAGAACATTGTTTCGCGTCCGTACGTAATGTTAAAAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

88.235

100

0.882