Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DMB76_RS06065 Genome accession   NZ_CP068029
Coordinates   1237250..1237678 (+) Length   142 a.a.
NCBI ID   WP_420802096.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain 13T0028     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1232250..1242678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB76_RS06030 (DMB76_006030) - 1232726..1232929 (+) 204 WP_115313271.1 YqgQ family protein -
  DMB76_RS06035 (DMB76_006035) - 1232926..1233912 (+) 987 WP_115313272.1 glucokinase -
  DMB76_RS06040 (DMB76_006040) - 1233912..1234238 (+) 327 WP_115313273.1 MTH1187 family thiamine-binding protein -
  DMB76_RS06045 (DMB76_006045) - 1234238..1234861 (+) 624 WP_115313274.1 MBL fold metallo-hydrolase -
  DMB76_RS06050 (DMB76_006050) comGA 1234918..1235892 (+) 975 Protein_1181 competence type IV pilus ATPase ComGA -
  DMB76_RS06055 (DMB76_006055) comGB 1235864..1236928 (+) 1065 WP_115313275.1 competence type IV pilus assembly protein ComGB Machinery gene
  DMB76_RS06060 (DMB76_006060) comGC 1236964..1237221 (+) 258 Protein_1183 competence type IV pilus major pilin ComGC -
  DMB76_RS06065 (DMB76_006065) comGD 1237250..1237678 (+) 429 WP_420802096.1 competence type IV pilus minor pilin ComGD Machinery gene
  DMB76_RS06070 (DMB76_006070) - 1238530..1239048 (+) 519 WP_420802097.1 shikimate kinase -
  DMB76_RS06075 (DMB76_006075) gcvT 1239235..1240326 (+) 1092 WP_115313279.1 glycine cleavage system aminomethyltransferase GcvT -
  DMB76_RS06080 (DMB76_006080) gcvPA 1240345..1241691 (+) 1347 WP_115313280.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16516.58 Da        Isoelectric Point: 10.4995

>NTDB_id=526379 DMB76_RS06065 WP_420802096.1 1237250..1237678(+) (comGD) [Staphylococcus saccharolyticus strain 13T0028]
MQISKAKAFTLIEMLSILLIISCLILTTLWSRSLLNIKTLNEEYKIEQLITKFNYFKSKAISNESSITLLFFNNTGRVQV
VEEKGNKYRFNIKGGKVINIAKLNTINFDKYGNISNFGSLMKEHIYKIIFHIEKGRIRYVKI

Nucleotide


Download         Length: 429 bp        

>NTDB_id=526379 DMB76_RS06065 WP_420802096.1 1237250..1237678(+) (comGD) [Staphylococcus saccharolyticus strain 13T0028]
TTGCAAATTAGCAAAGCTAAAGCATTTACCTTAATAGAGATGTTATCAATATTGTTGATTATTAGTTGCCTAATATTAAC
TACCCTTTGGTCACGAAGTTTACTAAACATAAAAACTTTAAACGAAGAGTATAAAATTGAACAATTAATCACAAAATTCA
ATTATTTCAAATCAAAAGCTATTAGTAATGAAAGTTCAATTACTTTATTATTTTTCAATAATACAGGAAGAGTACAAGTA
GTAGAAGAAAAAGGTAATAAATATAGATTCAATATCAAAGGTGGTAAAGTGATTAATATTGCTAAACTTAATACTATTAA
TTTCGATAAATATGGAAATATTAGCAATTTTGGCTCTCTAATGAAAGAACATATTTATAAAATAATTTTCCATATTGAAA
AAGGGCGAATAAGATATGTCAAAATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

47.26

100

0.486
  comGD Staphylococcus aureus N315

47.26

100

0.486