Detailed information NTG0526376

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K5P76_RS05565
• Genome accession: NZ_CP082127
• Coordinates: 1154548..1155540 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NDM_12_14482
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1149548..1160540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5P76_RS05535 (K5P76_05535)	ispD	1149609..1150319 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K5P76_RS05540 (K5P76_05540)	ispF	1150319..1150798 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K5P76_RS05545 (K5P76_05545)	truD	1150795..1151844 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
K5P76_RS05550 (K5P76_05550)	surE	1151825..1152586 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K5P76_RS05555 (K5P76_05555)	pcm	1152580..1153206 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K5P76_RS05560 (K5P76_05560)	nlpD	1153391..1154485 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K5P76_RS05565 (K5P76_05565)	rpoS	1154548..1155540 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K5P76_RS05570 (K5P76_05570)	ygbN	1155634..1156998 (-)	1365	WP_000104441.1	GntP family transporter	-
K5P76_RS05575 (K5P76_05575)	ygbM	1157087..1157863 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
K5P76_RS05580 (K5P76_05580)	ygbL	1157868..1158506 (-)	639	WP_001278994.1	aldolase	-
K5P76_RS05585 (K5P76_05585)	otnK	1158503..1159765 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=526376 K5P76_RS05565 WP_000081550.1 1154548..1155540(+) (rpoS) [Escherichia coli strain NDM_12_14482]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=526376 K5P76_RS05565 WP_000081550.1 1154548..1155540(+) (rpoS) [Escherichia coli strain NDM_12_14482]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715