Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   JKJ11_RS18815 Genome accession   NZ_CP068025
Coordinates   431031..432134 (+) Length   367 a.a.
NCBI ID   WP_006072798.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 426031..437134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS18785 (JKJ11_18805) - 427806..428384 (+) 579 WP_252039755.1 SOS response-associated peptidase family protein -
  JKJ11_RS18790 (JKJ11_18810) - 428655..428900 (-) 246 WP_006072803.1 YgjV family protein -
  JKJ11_RS18795 (JKJ11_18815) - 429176..429493 (-) 318 WP_006072802.1 DUF496 family protein -
  JKJ11_RS18800 (JKJ11_18820) - 429684..429899 (+) 216 WP_252040013.1 hypothetical protein -
  JKJ11_RS18805 (JKJ11_18825) - 429950..430609 (+) 660 WP_198558902.1 YceH family protein -
  JKJ11_RS18810 (JKJ11_18830) - 430671..430955 (+) 285 WP_240205345.1 GIY-YIG nuclease family protein -
  JKJ11_RS18815 (JKJ11_18835) luxP 431031..432134 (+) 1104 WP_006072798.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  JKJ11_RS18820 (JKJ11_18840) luxQ 432134..434728 (+) 2595 WP_124942062.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  JKJ11_RS18825 (JKJ11_18845) - 434780..436039 (-) 1260 WP_252039756.1 hydroxymethylglutaryl-CoA reductase -
  JKJ11_RS18830 (JKJ11_18850) - 436201..436362 (-) 162 WP_006072794.1 hypothetical protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41613.71 Da        Isoelectric Point: 5.0167

>NTDB_id=526358 JKJ11_RS18815 WP_006072798.1 431031..432134(+) (luxP) [Vibrio sp. SCSIO 43133]
MNRIYSTLLASIIIPFATQSAASEILPGYWDYQEYLRAHPVQEQLTNELSEVVRRQPTPLSVEQNKPVTISVVYPGQQVS
DYWVRNIKAFETRMEELGINYELNQVFTRPNIDLRQQSVSLMEAVKNKSGYLIFTLDTTRHRKFIEHVIHSTDTKLILQN
ITTPVRAWDENPPFLYVGFDHVIGSHLLSDYFKQRFENNHSYSVLYFSEGYVSDARGGTFIQDMEDSGNYQLASSYYTKA
NKESGYKAALSSLQQNPDISFIYACSTDVALGAVDALEQLKRNDIVINGWGGGSAELDAIANNKLDVTVMRMNDDTGVAM
AEAIKWDLEGKPVPTVYSGDFELVTSKDSQSRIDELKKKAFRYSDKS

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=526358 JKJ11_RS18815 WP_006072798.1 431031..432134(+) (luxP) [Vibrio sp. SCSIO 43133]
ATGAACAGAATCTATTCAACTTTGCTAGCTTCCATAATCATTCCATTCGCCACTCAGTCGGCAGCGAGTGAAATATTGCC
GGGCTATTGGGATTACCAAGAATATCTCCGTGCCCATCCTGTTCAAGAACAGCTTACCAATGAACTTTCCGAGGTTGTTA
GGCGACAGCCAACACCACTCTCTGTCGAGCAAAATAAACCAGTGACAATATCTGTGGTTTACCCCGGTCAACAGGTGTCT
GATTATTGGGTTAGGAACATCAAAGCCTTCGAGACACGTATGGAAGAACTTGGTATTAACTACGAGCTTAACCAAGTTTT
TACTCGACCTAATATTGATTTGCGACAGCAAAGTGTTTCGCTGATGGAAGCGGTAAAAAACAAGTCCGGTTATTTGATTT
TTACACTAGATACGACACGTCATCGTAAGTTCATTGAGCACGTAATTCATTCAACTGACACCAAGCTCATCTTGCAGAAT
ATCACGACTCCAGTGAGGGCATGGGATGAAAACCCTCCGTTTCTTTATGTTGGTTTTGACCACGTGATTGGCAGTCATCT
ACTCTCAGATTACTTTAAACAGCGCTTTGAAAATAACCATTCCTATTCTGTCTTGTATTTTTCAGAAGGTTACGTTAGCG
ATGCACGTGGCGGTACATTTATCCAAGACATGGAAGACTCGGGTAACTATCAACTCGCTTCATCCTATTACACAAAAGCG
AACAAAGAGAGTGGCTACAAGGCGGCATTGAGTAGCTTGCAACAGAACCCAGACATTAGCTTTATTTATGCTTGCTCAAC
GGATGTAGCTCTAGGCGCAGTTGATGCTCTAGAGCAGCTTAAACGCAATGATATCGTTATTAATGGTTGGGGAGGAGGGT
CTGCTGAACTTGATGCAATCGCTAATAATAAGCTTGATGTAACCGTTATGAGAATGAATGACGACACTGGTGTTGCAATG
GCGGAAGCTATTAAGTGGGACCTTGAAGGAAAGCCCGTACCAACGGTTTATTCCGGTGATTTTGAACTAGTTACCAGTAA
AGATTCTCAATCAAGGATCGATGAATTGAAAAAGAAAGCATTTAGATATTCTGATAAAAGCTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.789

96.73

0.627