Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   JKJ11_RS17500 Genome accession   NZ_CP068025
Coordinates   152342..153523 (-) Length   393 a.a.
NCBI ID   WP_006070539.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 147342..158523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS17485 (JKJ11_17505) moeA 147990..149225 (-) 1236 WP_006070542.1 molybdopterin molybdotransferase MoeA -
  JKJ11_RS17490 (JKJ11_17510) folE 149449..150102 (+) 654 WP_006070541.1 GTP cyclohydrolase I FolE -
  JKJ11_RS17495 (JKJ11_17515) - 150218..152293 (+) 2076 WP_236109609.1 hybrid sensor histidine kinase/response regulator -
  JKJ11_RS17500 (JKJ11_17520) cqsA 152342..153523 (-) 1182 WP_006070539.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JKJ11_RS17505 (JKJ11_17525) - 153745..154713 (-) 969 WP_038222071.1 TDT family transporter -
  JKJ11_RS17510 (JKJ11_17530) clcA 154816..156216 (-) 1401 WP_006070537.1 H(+)/Cl(-) exchange transporter ClcA -
  JKJ11_RS17515 (JKJ11_17535) - 156687..157673 (+) 987 WP_006070536.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43551.56 Da        Isoelectric Point: 6.6134

>NTDB_id=526356 JKJ11_RS17500 WP_006070539.1 152342..153523(-) (cqsA) [Vibrio sp. SCSIO 43133]
MHLEKITKTLPKFIEQQHDIYIAENIHSTKSKKHLVSGKRPTASDTSYQTNDYLCLNNNAYIKEKHIDAIRANTESMLMS
GVYTAEAEDSSAFEKKLAKLTGFEECVVSQSGYTANLSLLQAICTKDTNVYVDFFAHASLWEGARIAGAMVHPFMHNNIR
HLKRQIQKNGPGIILVDSIYSTLGTIAPLVDLVSMAYEYDCALVVDESHSLGTHGPKGAGLVAELGLTEHVDYITVSLAK
TFAYRAGAILSNKKTAHCLPFVAFPAIFSSMLLPYETERLSATVDVIKSADSARRSLFSNSDYLRNQLRNLGLSIRSESQ
IIALETGDAENTEIVRDFLESKGVFGSIFCTPATPKGKNIIRFSVTSEHTLEDLDRVVQACKEATENKEFYFL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=526356 JKJ11_RS17500 WP_006070539.1 152342..153523(-) (cqsA) [Vibrio sp. SCSIO 43133]
ATGCACTTAGAGAAAATAACAAAAACGTTGCCTAAATTTATTGAACAGCAACACGATATTTATATCGCTGAAAATATCCA
TTCAACCAAAAGTAAAAAGCATCTAGTCTCTGGGAAAAGACCTACGGCAAGTGATACTAGTTACCAAACAAATGACTATC
TATGTCTGAATAACAACGCCTATATTAAGGAGAAGCACATAGACGCTATACGAGCCAATACGGAAAGTATGTTGATGTCT
GGTGTTTATACTGCTGAGGCGGAAGACAGTTCTGCTTTTGAAAAAAAACTCGCTAAACTAACAGGATTTGAAGAGTGTGT
GGTATCACAATCAGGTTATACCGCAAACCTGAGCTTACTACAGGCTATCTGCACGAAAGACACTAATGTGTATGTTGATT
TCTTCGCTCATGCTTCATTATGGGAGGGTGCAAGAATTGCTGGCGCTATGGTTCATCCATTTATGCACAACAATATCAGG
CACTTAAAGCGACAGATTCAAAAGAATGGCCCAGGCATAATTCTAGTTGATTCTATCTACAGTACGTTGGGAACTATAGC
ACCGCTTGTAGACCTGGTATCAATGGCTTATGAGTATGACTGCGCATTGGTCGTGGATGAATCTCATTCACTTGGAACTC
ACGGTCCTAAAGGTGCTGGTTTAGTTGCTGAATTGGGTTTAACTGAGCATGTCGATTATATTACTGTGAGCTTAGCAAAA
ACATTTGCATATCGTGCAGGCGCAATTTTATCCAACAAAAAGACCGCACATTGTCTTCCATTTGTGGCATTCCCTGCAAT
ATTCAGTTCCATGCTACTACCGTATGAAACTGAACGGTTAAGTGCCACTGTCGACGTTATCAAGAGCGCCGACAGTGCAA
GACGCTCGTTGTTCTCAAATAGTGACTATTTAAGAAATCAGCTAAGAAACTTAGGACTATCTATTCGTAGTGAATCTCAG
ATCATCGCTTTGGAAACAGGTGACGCTGAAAACACTGAAATTGTTCGGGATTTCTTAGAGAGCAAAGGCGTTTTTGGTTC
AATCTTTTGTACACCGGCAACGCCAAAAGGAAAAAATATCATCAGATTTTCAGTCACTTCAGAGCATACTCTCGAGGATT
TAGATCGAGTAGTACAAGCATGTAAAGAAGCAACGGAAAACAAAGAATTCTATTTCTTATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(65-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.136

97.455

0.547