Detailed information NTG0526339

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JKJ11_RS14460
• Genome accession: NZ_CP068024
• Coordinates: 3100124..3101101 (-)
• Length: 325 a.a.
• NCBI ID: WP_006072644.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43133
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3095124..3106101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JKJ11_RS14440 (JKJ11_14430)	-	3095426..3096943 (-)	1518	WP_006072653.1	inorganic triphosphatase	-
JKJ11_RS14445 (JKJ11_14435)	-	3097149..3097829 (+)	681	WP_038222611.1	TIGR00153 family protein	-
JKJ11_RS14450 (JKJ11_14440)	-	3097954..3099216 (+)	1263	WP_038224033.1	inorganic phosphate transporter	-
JKJ11_RS14455 (JKJ11_14445)	-	3099438..3100049 (+)	612	WP_006072646.1	TIGR04211 family SH3 domain-containing protein	-
JKJ11_RS14460 (JKJ11_14450)	rpoS	3100124..3101101 (-)	978	WP_006072644.1	RNA polymerase sigma factor RpoS	Regulator
JKJ11_RS14465 (JKJ11_14455)	nlpD	3101217..3102173 (-)	957	WP_124940255.1	murein hydrolase activator NlpD	-
JKJ11_RS14470 (JKJ11_14460)	-	3102174..3102797 (-)	624	WP_006072640.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JKJ11_RS14475 (JKJ11_14465)	surE	3102802..3103566 (-)	765	WP_006072638.1	5'/3'-nucleotidase SurE	-
JKJ11_RS14480 (JKJ11_14470)	truD	3103571..3104548 (-)	978	WP_252039126.1	tRNA pseudouridine(13) synthase TruD	-
JKJ11_RS14485 (JKJ11_14475)	ispF	3104561..3105040 (-)	480	WP_006072635.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JKJ11_RS14490 (JKJ11_14480)	ispD	3105037..3105747 (-)	711	WP_006072633.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JKJ11_RS14495 (JKJ11_14485)	ftsB	3105744..3106025 (-)	282	WP_006072631.1	cell division protein FtsB	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37188.02 Da
• Isoelectric Point: 4.6733

>NTDB_id=526339 JKJ11_RS14460 WP_006072644.1 3100124..3101101(-) (rpoS) [Vibrio sp. SCSIO 43133]
MSISNAVTKNENFDVETESTEIVENALTNDESISEDKDMYDASAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALKGDE
AARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLP
IHVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVSDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDSTHSDPEV
STQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLRDILIKQGLNMESLF
NFDDD

Nucleotide

• Length: 978 bp

>NTDB_id=526339 JKJ11_RS14460 WP_006072644.1 3100124..3101101(-) (rpoS) [Vibrio sp. SCSIO 43133]
ATGAGTATCAGCAATGCAGTAACCAAAAATGAAAACTTCGACGTTGAAACGGAATCAACGGAGATCGTCGAAAACGCACT
TACCAACGATGAATCCATTTCTGAAGATAAAGATATGTATGACGCATCGGCGAAAAGCCTGGATGCGACTCAGCTTTACT
TAGGCGAAATTGGTTTCTCTCCATTACTTACCGCGGAAGAAGAAGTCCTGTATGCGCGACGTGCCCTAAAGGGTGACGAA
GCCGCTCGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTGAAGATCTCTCGACGTTACAGTAATCGTGGGCTGGC
GCTGCTTGATCTTATTGAGGAAGGAAACCTTGGTTTGATTCGAGCAGTCGAAAAGTTTGACCCAGAACGAGGCTTCCGTT
TTTCTACTTACGCCACTTGGTGGATCCGACAAACGATTGAACGTGCGTTAATGAATCAGACTCGCACCATTCGTCTTCCG
ATTCATGTAGTGAAAGAACTCAATATCTATTTGCGTACTGCTCGTGAGTTATCACAGAAGCTAGACCATGAGCCTACAGC
AGAAGAGATTGCACAGAAGCTTGATAAGCCAGTCAGTGATGTGTCTAAGATGCTACGTCTAAATGAACGTATTAGCTCAG
TAGATACACCGATTGGCGGTGATGGTGAAAAAGCACTCCTAGATATTATTCCTGACTCAACGCATTCAGACCCTGAAGTA
TCGACTCAAGATGATGATATCAAGTCTTCGCTGATTCACTGGCTTGACGAGCTAAACCCTAAGCAGAAAGAAGTACTAGC
ACGACGTTTTGGTCTGCTCGGTTATGAGCCATCGACACTAGAAGAAGTAGGACGTGAGATTAATCTGACCCGTGAACGCG
TGAGACAGATTCAAGTTGAAGGCTTACGTCGACTTCGCGATATCCTGATCAAACAAGGGTTGAATATGGAGTCACTGTTC
AATTTCGATGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (48-81)

• Sigma-70, region 4 (Sigma70_r4) (254-306)

• Sigma-70 region 2 (Sigma70_r2) (86-155)

• Sigma-70 region 3 (Sigma70_r3) (166-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.862