Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JKJ11_RS08060 Genome accession   NZ_CP068024
Coordinates   1684934..1686355 (-) Length   473 a.a.
NCBI ID   WP_252039049.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679934..1691355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS08035 (JKJ11_08030) - 1680951..1681307 (+) 357 WP_006072452.1 VOC family protein -
  JKJ11_RS08040 (JKJ11_08035) purT 1681385..1682560 (-) 1176 WP_006072453.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  JKJ11_RS08045 (JKJ11_08040) cdd 1682718..1683605 (-) 888 WP_006072456.1 cytidine deaminase -
  JKJ11_RS08050 (JKJ11_08045) - 1683782..1684468 (-) 687 WP_006072457.1 CidB/LrgB family autolysis modulator -
  JKJ11_RS08055 (JKJ11_08050) - 1684470..1684835 (-) 366 WP_252039048.1 CidA/LrgA family protein -
  JKJ11_RS08060 (JKJ11_08055) sbcB 1684934..1686355 (-) 1422 WP_252039049.1 exodeoxyribonuclease I Machinery gene
  JKJ11_RS08065 (JKJ11_08060) - 1686638..1688011 (+) 1374 WP_252039050.1 Na+/H+ antiporter NhaC family protein -
  JKJ11_RS08070 (JKJ11_08065) - 1688302..1688895 (+) 594 WP_006072464.1 GNAT family N-acetyltransferase -
  JKJ11_RS08075 (JKJ11_08070) - 1689324..1689959 (+) 636 WP_062460570.1 alternative oxidase -
  JKJ11_RS08080 (JKJ11_08075) - 1690131..1690724 (+) 594 WP_239942066.1 DJ-1/PfpI family protein -
  JKJ11_RS08085 (JKJ11_08080) - 1690721..1691224 (+) 504 WP_252039051.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54531.71 Da        Isoelectric Point: 4.9079

>NTDB_id=526331 JKJ11_RS08060 WP_252039049.1 1684934..1686355(-) (sbcB) [Vibrio sp. SCSIO 43133]
MSQHQPTYFFFDYETWGVSPAKDRPCQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQLCQEKGLSEPE
FIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTS
FKLEHLSVANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYT
SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKCPILAPAKTLTAENAES
IGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGDVDTQLYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPR
IEPLLFRYRARHFPWSLDETEQARWANHCREFFESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLVS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=526331 JKJ11_RS08060 WP_252039049.1 1684934..1686355(-) (sbcB) [Vibrio sp. SCSIO 43133]
ATGTCCCAACACCAACCCACTTATTTCTTTTTCGATTATGAAACATGGGGAGTGAGCCCTGCTAAGGACAGACCTTGTCA
GTTTGCGGGTGTACGGACGGATGAGAACTTTAATATCATTGGTGAGCCATTGGTTATTTACTGCCAGCCACCATCGGACT
ACTTACCTTCTCCCGAAGCAGCATTAATCACAGGTATCACACCACAACTTTGTCAGGAGAAAGGGCTCTCAGAACCAGAG
TTCATTGCTAAGATTCATCACGAACTAGCCACACCAAACACAACAAGCCTTGGTTACAACAGCATTCGCTTTGACGATGA
GGTAACTCGTTATACCTGTTATCGTAACTTCATCGATCCTTACGCATGGAGTTGGCAGAACGGTAACTCACGTTGGGATT
TATTGGATGTTATGCGCGCATGCCACGCACTCCGCCCTGAAGGAATTGAATGGCCGGAGAATGACGAAGGGTTTACCAGT
TTTAAACTTGAACATCTCTCTGTTGCTAATGGTATCGAACACGAAAATGCTCACGATGCCATGGCAGACGTTATTGCAAC
GATAGAACTAGCCAAAAAAGTAAAGGCCGCGCAGCCAAAACTGTTTGACTACTTTTATTCGATGCGTCAAAAGCGAAAAC
TAAACGAACTCGTCGATATCGTGAACATGACACCCTTGATGCATGTATCTGGAATGTTAGGTAAAGAGTGCCAATATACC
AGTTGGGTAGTACCTATCGCGTGGCACCCAACCAATCAAAATGCGGTTATCGTTGCTGATCTGGCCAAAGACCCACAACC
ACTATTAGATTTAGATGTTGATGCATTACATCAGCGCCTATACACCCGACATGATGAACTCGCACCGGACGAGAAACCTG
TCCCGCTTAAACTTATTCATCTCAACAAGTGCCCTATTCTCGCGCCGGCCAAAACGCTCACAGCGGAAAATGCAGAGTCC
ATTGGCATTGACAGAGAGCAGTGTTTGAAGAACCTAGCCCTAATCAAACAACATCCAGAGATCCGTGAAAAACTGATCGG
ACTATATAGTATTGAGCGCGAGTTTGAGAATGATGGCGACGTAGATACTCAGCTCTACAGCGGCTTTTTCTCGCCAGCAG
ACAAGAGCGCGATGGATATTATTCGCGAAACGGACCCAAACAATCTATCTGCATTAGACATTAGTTTTAGTGATCCTCGT
ATTGAACCGCTGCTATTCAGGTACCGTGCACGCCATTTCCCATGGAGCCTTGATGAAACGGAACAAGCTCGCTGGGCAAA
CCATTGTCGTGAGTTTTTCGAAAGTCGTATTGAAAGCTATATGCTAAATATGGAAAACTTAGTTCACGAACATGAGTCTG
ACGAGAAGAAACTCGCCATACTAAAATCCGTCTACCGCTACGTGGAGCGTCTCGTTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.723

99.366

0.782