Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JKJ11_RS02100 Genome accession   NZ_CP068024
Coordinates   396183..396701 (+) Length   172 a.a.
NCBI ID   WP_031493706.1    Uniprot ID   A0A240E9Y8
Organism   Vibrio sp. SCSIO 43133     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 391183..401701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS02090 (JKJ11_02090) - 391526..394384 (+) 2859 WP_252038685.1 pitrilysin family protein -
  JKJ11_RS02095 (JKJ11_02095) gshA 394496..396088 (+) 1593 WP_252038686.1 glutamate--cysteine ligase -
  JKJ11_RS02100 (JKJ11_02100) luxS 396183..396701 (+) 519 WP_031493706.1 S-ribosylhomocysteine lyase Regulator
  JKJ11_RS02105 (JKJ11_02105) ruvX 396792..397217 (-) 426 WP_006075166.1 Holliday junction resolvase RuvX -
  JKJ11_RS02110 (JKJ11_02110) - 397260..397829 (-) 570 WP_031493705.1 YqgE/AlgH family protein -
  JKJ11_RS02115 (JKJ11_02115) gshB 397847..398794 (-) 948 WP_124940578.1 glutathione synthase -
  JKJ11_RS02120 (JKJ11_02120) rsmE 398808..399539 (-) 732 WP_006075169.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JKJ11_RS02125 (JKJ11_02125) - 399620..400330 (-) 711 WP_031493704.1 endonuclease -
  JKJ11_RS02130 (JKJ11_02130) - 400428..400937 (-) 510 WP_006075171.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18896.68 Da        Isoelectric Point: 4.7114

>NTDB_id=526323 JKJ11_RS02100 WP_031493706.1 396183..396701(+) (luxS) [Vibrio sp. SCSIO 43133]
MPLLDSFTVDHTKMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLSAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKAIAEAIIAAGIQVNKNDELA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=526323 JKJ11_RS02100 WP_031493706.1 396183..396701(+) (luxS) [Vibrio sp. SCSIO 43133]
ATGCCACTACTGGATAGCTTCACGGTAGACCACACAAAGATGCACGCACCTGCTGTACGTGTAGCGAAAACAATGCAAAC
CCCAAAAGGCGACACTATCACGGTGTTTGACCTACGTTTCACGGCGCCAAACAAAGATATCCTTTCTGAGAAAGGCATCC
ACACGCTTGAGCACCTATACGCTGGCTTTATGCGTGCACACCTAAATGGTGATGCTGTTGAAATCATCGATATTTCTCCA
ATGGGCTGCCGTACAGGTTTCTACATGAGCTTAATCGGTACACCTTCAGAGCAACAAGTAGCGGACGCTTGGTTAAGCGC
GATGCAAGACGTTCTGAAAGTAGAAAGCCAGAACAAGATTCCTGAGCTGAATGAGTATCAGTGCGGTACGGCGGCTATGC
ACTCTTTAGAAGAGGCAAAAGCGATTGCGGAAGCGATTATTGCGGCGGGTATTCAAGTAAACAAAAACGACGAACTGGCT
CTGCCAGAGTCAATGCTTCAAGAATTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240E9Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884