Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JJQ94_RS22350 Genome accession   NZ_CP068023
Coordinates   3766951..3768450 (+) Length   499 a.a.
NCBI ID   WP_099030722.1    Uniprot ID   A0A2C6E5A9
Organism   Pseudoalteromonas sp. GCY     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3761951..3773450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ94_RS22320 (JJQ94_22320) - 3762605..3763564 (+) 960 WP_010376669.1 calcium/sodium antiporter -
  JJQ94_RS22325 (JJQ94_22325) - 3763574..3764545 (+) 972 WP_099030726.1 KpsF/GutQ family sugar-phosphate isomerase -
  JJQ94_RS22330 (JJQ94_22330) kdsC 3764545..3765096 (+) 552 WP_099030725.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JJQ94_RS22335 (JJQ94_22335) lptC 3765093..3765647 (+) 555 WP_099030724.1 LPS export ABC transporter periplasmic protein LptC -
  JJQ94_RS22340 (JJQ94_22340) lptA 3765637..3766182 (+) 546 WP_099030723.1 lipopolysaccharide transport periplasmic protein LptA -
  JJQ94_RS22345 (JJQ94_22345) lptB 3766179..3766904 (+) 726 WP_010376664.1 LPS export ABC transporter ATP-binding protein -
  JJQ94_RS22350 (JJQ94_22350) rpoN/rpoN1 3766951..3768450 (+) 1500 WP_099030722.1 RNA polymerase factor sigma-54 Machinery gene
  JJQ94_RS22355 (JJQ94_22355) hpf 3768480..3768767 (+) 288 WP_010376661.1 ribosome hibernation promoting factor -
  JJQ94_RS22360 (JJQ94_22360) ptsN 3768769..3769227 (+) 459 WP_099030721.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JJQ94_RS22365 (JJQ94_22365) rapZ 3769220..3770086 (+) 867 WP_010605937.1 RNase adapter RapZ -
  JJQ94_RS22370 (JJQ94_22370) - 3770087..3770356 (+) 270 WP_099030720.1 HPr family phosphocarrier protein -
  JJQ94_RS22375 (JJQ94_22375) mgtE 3770716..3772074 (+) 1359 WP_088531979.1 magnesium transporter -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55892.99 Da        Isoelectric Point: 4.4027

>NTDB_id=526315 JJQ94_RS22350 WP_099030722.1 3766951..3768450(+) (rpoN/rpoN1) [Pseudoalteromonas sp. GCY]
MRQSLQLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGDNTDGENADQHSQEKSSADDNQDSGDEA
QVSDYEIDSDTAMSKDTVSDDLAMDVTWDEYMSAAPAASSGPLPDDDNVYQGETSESLHDYLMWQLELTPFSPTDRAIAI
AIIEAVDLSGILTLSCEDILESINDESSEEPIELDEVEAVLKRIQLFDPVGIAARSLQECLCIQLNQFAPDTPWIAETKM
ILTEHIDLLASRDYRTLAKKTRLKEADLKEVMTLIHSLNPKPAASIIHEEPEYVIPDVSVKKVKGRWVVELNPDAMPKIR
VNDHYAAMSRTAKSSTDSQFIRSHLQEAKWFIKSLESRNDTLLKVTNCIVQQQQAFFEHGPEAMRPMVLNDVAEMVEMHE
STISRVTTQKYMHTPRGIFELKYFFSSHVSTENGGECSSTAIRALIKKLVAAENTAKPLSDSKIADILAEQGIKVARRTI
AKYRESLAIPPSNQRKSLI

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=526315 JJQ94_RS22350 WP_099030722.1 3766951..3768450(+) (rpoN/rpoN1) [Pseudoalteromonas sp. GCY]
ATGAGGCAATCATTACAGCTGCGCATGGGGCAGCAACTTACAATGACTCCACAGCTGCAACAAGCCATTCGCTTGCTGCA
GCTTAGTACATTGGATCTGCAACAAGAAATACAAGAAGCATTAGACAGCAATCCATTGTTAGAAGTGGAAGAAGGTGATA
ATACTGACGGCGAAAACGCTGACCAACATAGTCAAGAAAAGAGCAGTGCTGACGACAATCAAGATTCAGGCGATGAAGCG
CAGGTTAGTGACTATGAGATAGACTCAGATACCGCCATGAGCAAAGACACTGTGAGCGATGACCTTGCCATGGATGTCAC
TTGGGACGAGTATATGAGTGCAGCACCCGCTGCAAGCTCAGGCCCACTTCCCGATGACGATAATGTTTATCAAGGGGAAA
CCTCTGAATCTCTCCACGACTATCTCATGTGGCAACTTGAGCTGACGCCATTTAGTCCAACAGATAGAGCTATTGCGATT
GCGATTATTGAAGCGGTCGACCTGTCAGGCATTTTAACACTGTCTTGCGAAGACATTTTAGAAAGCATTAATGATGAAAG
TAGCGAAGAGCCTATTGAGCTGGATGAAGTCGAAGCCGTGCTCAAACGTATTCAGCTTTTCGACCCTGTCGGTATCGCAG
CGCGTAGTTTACAAGAATGCTTGTGTATTCAGCTAAATCAATTCGCCCCAGATACGCCATGGATTGCCGAAACGAAAATG
ATCCTGACAGAGCATATCGACTTGCTTGCCAGCCGTGACTATCGAACTTTGGCAAAGAAAACGCGCCTTAAAGAAGCCGA
TCTCAAAGAGGTCATGACGTTAATTCATAGCCTTAACCCAAAACCAGCTGCAAGCATTATTCATGAAGAGCCTGAATATG
TGATCCCTGATGTATCGGTGAAAAAAGTAAAAGGTCGTTGGGTCGTAGAGCTAAATCCTGATGCTATGCCTAAAATAAGA
GTAAATGACCATTATGCTGCGATGTCTAGAACGGCGAAATCCAGTACGGATAGTCAGTTTATTCGCTCACATTTACAAGA
AGCAAAGTGGTTTATTAAAAGCTTAGAAAGCCGAAATGATACTTTATTAAAAGTTACCAATTGCATTGTGCAACAACAAC
AGGCATTCTTTGAACATGGCCCCGAAGCAATGCGCCCTATGGTGCTAAATGATGTTGCTGAAATGGTTGAGATGCATGAG
TCCACAATTTCCCGTGTGACAACACAAAAATACATGCATACACCTCGGGGAATATTTGAGCTGAAGTATTTCTTCTCTAG
CCATGTAAGTACAGAAAATGGAGGTGAGTGCTCCTCTACAGCAATTAGAGCACTTATCAAAAAGCTGGTAGCTGCAGAAA
ATACCGCTAAGCCATTGAGTGACAGCAAAATTGCAGATATCTTAGCTGAGCAAGGAATTAAGGTAGCGAGACGCACGATT
GCAAAATATCGTGAATCCCTAGCCATTCCACCGTCAAATCAGCGTAAAAGCTTGATATAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-325)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C6E5A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.243

100

0.481